YRC Public Data Repository - Protein Structure Prediction

Protein:	YBJQ_SALCH
Organism:	Salmonella enterica
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBJQ_SALCH.

Description	E-value	Query Range	Subject Range
Y2666_ERWCT - UPF0145 protein ECA2666 OS=Erwinia carotovora subsp. atroseptica GN=ECA2666 PE=3 SV=1 Y2666_PECAS - UPF0145 protein ECA2666 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2666 ...	149.0	[0..1]	[107..1]
gi\|37200483, gi\|... - gi\|37675943\|ref\|NP_936339.1\| hypothetical protein VVA0283 [Vibrio vulnificus YJ016], gi\|37200483\|dbj...	147.0	[0..1]	[106..16]
Y734_NITMU - UPF0145 protein Nmul_A0734 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A07...	146.0	[0..1]	[106..1]
gi\|18073211 - gi\|18073211\|emb\|CAC80661.1\| hypothetical protein (conserved) [Listeria ivanovii]	146.0	[0..1]	[106..11]
gi\|83945197, gi\|... - gi\|83945197\|ref\|ZP_00957546.1\| hypothetical protein OA2633_00480 [Oceanicaulis alexandrii HTCC2633],...	146.0	[0..1]	[105..1]
gi\|118723107, gi... - gi\|18073203\|emb\|CAC80654.1\| hypothetical protein (conserved) [Listeria innocua], gi\|118723123\|gb\|ABL...	146.0	[0..1]	[106..11]
Y1032_NITEU - UPF0145 protein NE1032 OS=Nitrosomonas europaea GN=NE1032 PE=3 SV=1 Y1032_NITEU - UPF0145 protein NE1032 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=NE1032 PE=3 SV=1	145.0	[0..1]	[106..1]
gi\|45602891, gi\|... - gi\|45602898\|gb\|AAS72334.1\| hypothetical protein [Listeria seeligeri], gi\|45602891\|gb\|AAS72328.1\| hyp...	144.0	[0..1]	[106..1]
tr\|A2PRH7\|A2PRH7... - UPF0145 protein DN30_169 OS=Vibrio cholerae GN=DN30_169 PE=3 SV=1, UPF0145 protein A51_C0935 OS=Vibr... gi\|229336657, gi... - gi\|229526499\|ref\|ZP_04415903.1\| hypothetical protein VCA_000627 [Vibrio cholerae bv. albensis VL426]... gi\|229514363, gi... - gi\|229514363\|ref\|ZP_04403824.1\| hypothetical protein VCB_002013 [Vibrio cholerae TMA 21], gi\|2293483... gi\|125622808, gi... - gi\|75821030\|ref\|ZP_00751066.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|153801413, gi... - gi\|153801413\|ref\|ZP_01955999.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123079...	144.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSTTPTLE GQSIVEYCGV VTGEAILGAN IFRDFFAGIR DIVGGRSGAY EKELRKAREI  60
   61 AFQELGEQAK ALGADAVVGI DIDYETVGKD GSMLMVSVSG TAVKTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1y2iA
Description:	Crystal Structure of MCSG Target APC27401 from Shigella flexneri
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits