YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37962742\|gb\|A...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium
Length:	52 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37962742|gb|A....

Description	E-value	Query Range	Subject Range
gi\|195936128 - gi\|195936128\|ref\|ZP_03081510.1\| hypothetical protein EscherichcoliO157_06636 [Escherichia coli O157:... gi\|209777642, gi... - pir\|\|G85556 hypothetical protein Z0721 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800295, gi\|... - gi\|15800295\|ref\|NP_286307.1\| hypothetical protein Z0721 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|254591147, gi... - gi\|254791747\|ref\|YP_003076584.1\| hypothetical protein ECSP_0634 [Escherichia coli O157:H7 str. TW143...	78.0	[0..1]	[52..47]
gi\|254667512, gi... - gi\|254667512\|ref\|YP_003082198.1\| small toxic polypeptide [Escherichia coli O157:H7 str. TW14359], gi... gi\|91075794, gi\|... - gi\|91206343\|ref\|YP_538697.1\| stable plasmid inheritance protein [Escherichia coli UTI89], gi\|9107579... gi\|3337051, gi\|1... - gi\|3337051\|dbj\|BAA31810.1\| Stable plasmid inheritance protein (F leading maintenance protein) [Esche... gi\|75994536 - gi\|75994536\|ref\|YP_325650.1\| small toxic polypeptide [Escherichia coli O157:H7 EDL933] gi\|8918889, gi\|9... - gi\|9507779\|ref\|NP_061445.1\| small toxic polypeptide [Plasmid F], gi\|8918889\|dbj\|BAA97936.1\| flmA [Pl... FLMA_ECOLI - Stable plasmid inheritance protein (F leading maintenance protein) - Escherichia coli FLMA_ECO57 - Stable plasmid inheritance protein OS=Escherichia coli O157:H7 GN=flmA PE=3 SV=1 FLMA_ECOLI, sp\|P... - Stable plasmid inheritance protein OS=Escherichia coli (strain K12) GN=flmA PE=3 SV=1, Stable plasmi... gi\|208811338, gi... - gi\|208811338\|ref\|ZP_03253098.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|208823393, gi... - gi\|208823393\|ref\|ZP_03263710.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|209395606, gi... - gi\|209395606\|ref\|YP_002268451.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 st... gi\|217317101, gi... - gi\|217329870\|ref\|ZP_03445945.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|187736776 - gi\|187736776\|ref\|YP_001816514.1\| small toxic polypeptide [Escherichia coli 1520] gi\|195939986 - gi\|195939986\|ref\|ZP_03085368.1\| small toxic polypeptide [Escherichia coli O157:H7 str. EC4024]	77.0	[0..1]	[52..1]
gi\|38259540, gi\|... - gi\|38348063\|ref\|NP_941312.1\| small toxic polypeptide [Serratia marcescens], gi\|38259540\|emb\|CAE51768... gi\|226426016, gi... - gi\|226810103\|ref\|YP_002791798.1\| hypothetical protein pEC-IMPQ_230 [Enterobacter cloacae], gi\|226807...	74.0	[0..1]	[52..1]
gi\|10955445, gi\|... - gi\|9971639\|dbj\|BAB12590.1\| yaeB [Escherichia coli], gi\|10955445\|ref\|NP_065297.1\| post-segregation ki...	73.0	[0..1]	[50..1]
gi\|160431875, gi... - gi\|160431875\|ref\|YP_001551989.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serova... gi\|145849097 - gi\|145849097\|emb\|CAM91663.1\| putative stable plasmid inheritance protein [Salmonella enterica] gi\|16505979, gi\|... - gi\|18466663\|ref\|NP_569471.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serovar Ty...	73.0	[0..1]	[52..1]
gi\|10957290, gi\|... - gi\|7800343\|gb\|AAF69939.1\|AF250878_100 plasmid maintenance protein [Salmonella typhi], gi\|10957290\|re... gi\|7800343\|gb\|AA... - plasmid maintenance protein [Salmonella typhi], plasmid maintenance protein [Salmonella typhi]	73.0	[0..1]	[52..20]
gi\|75510952, gi\|... - gi\|75510952\|ref\|ZP_00733717.1\| hypothetical protein Ecol5_01004671 [Escherichia coli 53638], gi\|7551...	72.0	[0..4]	[52..22]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPRSSLVW CVLIVCLTLL IFTYLTRKSL CEIRYRDGHR EVAAFMAYES GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits