YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13310745\|gb\|A...
Organism:	Shigella flexneri 5a
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13310745|gb|A....

Description	E-value	Query Range	Subject Range
gi\|62129177, gi\|... - gi\|62181544\|ref\|YP_217961.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	116.0	[0..1]	[75..47]
gi\|193064713, gi... - gi\|75257281\|ref\|ZP_00728805.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|193068419, gi... - gi\|75237779\|ref\|ZP_00721795.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|75229200, gi\|... - gi\|75229200\|ref\|ZP_00715768.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|194414578, gi... - gi\|75211440\|ref\|ZP_00711530.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|75187222, gi\|... - gi\|75187222\|ref\|ZP_00700489.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|209919950, gi... - gi\|209919950\|ref\|YP_002294034.1\| hypothetical protein ECSE_2759 [Escherichia coli SE11], gi\|20991320...	112.0	[0..1]	[75..1]
gi\|16761811 - gi\|16761811\|ref\|NP_457428.1\| hypothetical protein STY3183 [Salmonella enterica subsp. enterica serov... VAPB_SALTY - Antitoxin VapB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=vapB PE=1 SV=1 gi\|29143295, gi\|... - gi\|29143295\|ref\|NP_806637.1\| hypothetical protein t2944 [Salmonella enterica subsp. enterica serovar... gi\|213646040 - gi\|213646040\|ref\|ZP_03376093.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213609401 - gi\|213609401\|ref\|ZP_03369227.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213579770 - gi\|213579770\|ref\|ZP_03361596.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213420651 - gi\|213420651\|ref\|ZP_03353717.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213852115 - gi\|213852115\|ref\|ZP_03381647.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|213163805 - gi\|213163805\|ref\|ZP_03349515.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica se... gi\|16504113, gi\|... - gi\|25302596\|pir\|\|AD0870 hypothetical protein (assiciated with virulence) STY3183 [imported] - Salmon... gi\|206710101, gi... - gi\|207858298\|ref\|YP_002244949.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri... gi\|198243468, gi... - gi\|198243468\|ref\|YP_002217012.1\| putative virulence-associated protein [Salmonella enterica subsp. e... VAPB_SALTY - Antitoxin VapB OS=Salmonella typhimurium GN=vapB PE=1 SV=1	110.0	[0..1]	[75..1]
gi\|56414981, gi\|... - gi\|56414981\|ref\|YP_152056.1\| hypothetical protein SPA2902 [Salmonella enterica subsp. enterica serov... gi\|224584825, gi... - gi\|224584825\|ref\|YP_002638623.1\| hypothetical protein (associated with virulence) [Salmonella enteri... gi\|197363910, gi... - gi\|197363910\|ref\|YP_002143547.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri...	110.0	[0..1]	[75..1]
gi\|194435279, gi... - gi\|194435279\|ref\|ZP_03067498.1\| putative virulence-associated protein [Shigella dysenteriae 1012], g... gi\|75176632 - gi\|75176632\|ref\|ZP_00696765.1\| COG4456: Virulence-associated protein and related proteins [Shigella ... gi\|32307073 - gi\|32307073\|gb\|AAP79035.1\| MvpT [Shigella flexneri] gi\|188501429, gi... - gi\|75512305\|ref\|ZP_00734867.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|81248289, gi\|... - gi\|82524787\|ref\|YP_406348.1\| plasmid maintenance protein [Shigella boydii Sb227], gi\|81248289\|gb\|ABB...	108.0	[0..1]	[75..1]
gi\|82524526, gi\|... - gi\|82524526\|ref\|YP_406121.1\| plasmid maintenance protein [Shigella dysenteriae Sd197], gi\|81243924\|g...	107.0	[0..1]	[75..1]
gi\|109389627, gi... - gi\|190014906\|ref\|YP_001965418.1\| Post-segregational killing toxin [Escherichia coli], gi\|109389627\|g... gi\|215276223, gi... - gi\|215276223\|ref\|YP_002332186.1\| post-segregational killing toxin [Escherichia coli O127:H6 str. E23...	107.0	[0..1]	[75..1]
gi\|112823951, gi... - gi\|23467533\|ref\|ZP_00123114.1\| COG4456: Virulence-associated protein and related proteins [Haemophil...	105.0	[0..1]	[75..4]
gi\|66044150, gi\|... - gi\|66044150\|ref\|YP_233991.1\| SpoVT/AbrB-like [Pseudomonas syringae pv. syringae B728a], gi\|63254857\|...	105.0	[0..2]	[75..3]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTVFLSNR SQAVRLPKAV ALPENVKRVE VIAVGRTRII TPAGETWDEW FDGHSVSTDF  60
   61 MDNREQPGMQ ERESF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.84
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits