YRC Public Data Repository - Protein Structure Prediction

Protein:	EG10168
Organism:	Escherichia coli str. K-12 substr. MG1655
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EG10168.

Description	E-value	Query Range	Subject Range
gi\|62126897, gi\|... - gi\|62179264\|ref\|YP_215681.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s...	417.0	[0..1]	[512..18]
LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium GN=lnt PE=3 SV=2 LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|206707934, gi... - gi\|207856131\|ref\|YP_002242782.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... gi\|205351951, gi... - gi\|205351951\|ref\|YP_002225752.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... LNT_SALTY - Apolipoprotein N-acyltransferase OS=Salmonella typhimurium GN=lnt PE=3 SV=2 lcl\|NC_016856.1_... - [gene=lnt] [protein=apolipoprotein N-acyltransferase] [protein_id=YP_005236382.1] [location=compleme...	415.0	[0..1]	[512..1]
gi\|213417192 - gi\|213417192\|ref\|ZP_03350336.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteric... LNT_SALTI - Apolipoprotein N-acyltransferase OS=Salmonella typhi GN=lnt PE=3 SV=1 gi\|29138240, gi\|... - gi\|29142609\|ref\|NP_805951.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s... gi\|213586696 - gi\|213586696\|ref\|ZP_03368522.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteric... gi\|16759618 - gi\|16759618\|ref\|NP_455235.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s... gi\|213647484 - gi\|213647484\|ref\|ZP_03377537.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteric... gi\|213852456 - gi\|213852456\|ref\|ZP_03381988.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteric... LNT_SALTI - Apolipoprotein N-acyltransferase OS=Salmonella typhi GN=lnt PE=3 SV=1	415.0	[0..1]	[512..1]
gi\|197094606, gi... - gi\|197363129\|ref\|YP_002142766.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enteri... gi\|56128462, gi\|... - gi\|56414205\|ref\|YP_151280.1\| apolipoprotein N-acyltransferase [Salmonella enterica subsp. enterica s...	414.0	[0..1]	[512..1]
gi\|218364357, gi... - gi\|218557588\|ref\|YP_002390501.1\| apolipoprotein N-acyltransferase [Escherichia coli S88], gi\|2183643... gi\|91209700, gi\|... - gi\|91209700\|ref\|YP_539686.1\| apolipoprotein N-acyltransferase [Escherichia coli UTI89], gi\|91071274\|... gi\|226898584, gi... - gi\|237707374\|ref\|ZP_04537855.1\| apolipoprotein N-acyltransferase [Escherichia sp. 3_2_53FAA], gi\|226... gi\|115511990, gi... - gi\|117622866\|ref\|YP_851779.1\| apolipoprotein N-acyltransferase [Escherichia coli APEC O1], gi\|115511...	412.0	[0..1]	[512..1]
gi\|124529692, gi... - gi\|124529692\|ref\|ZP_01700599.1\| apolipoprotein N-acyltransferase [Escherichia coli B], gi\|124499695\|... gi\|157160145, gi... - gi\|75194834\|ref\|ZP_00704904.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli HS], gi\|1... gi\|170020986, gi... - gi\|170020986\|ref\|YP_001725940.1\| apolipoprotein N-acyltransferase [Escherichia coli ATCC 8739], gi\|1...	412.0	[0..1]	[512..1]
gi\|110342471, gi... - gi\|110640879\|ref\|YP_668607.1\| apolipoprotein N-acyltransferase [Escherichia coli 536], gi\|110342471\|... gi\|75237590, gi\|... - gi\|75237590\|ref\|ZP_00721621.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli F11], gi\|...	412.0	[0..1]	[512..1]
gi\|82775934, gi\|... - gi\|82775934\|ref\|YP_402281.1\| apolipoprotein N-acyltransferase [Shigella dysenteriae Sd197], gi\|81240...	411.0	[0..1]	[512..1]
gi\|208823016, gi... - gi\|208823016\|ref\|ZP_03263334.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|209160090, gi... - gi\|209398690\|ref\|YP_002269292.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4... gi\|217324977, gi... - gi\|217324977\|ref\|ZP_03441061.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. TW14... gi\|12513563, gi\|... - gi\|15800370\|ref\|NP_286382.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|189375564, gi... - gi\|189375564\|gb\|EDU93980.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC508], ... LNT_ECO57 - Apolipoprotein N-acyltransferase OS=Escherichia coli O157:H7 GN=lnt PE=3 SV=1 gi\|25320781, gi\|... - pir\|\|G90715 apolipoprotein N-acyltransferase [imported] - Escherichia coli (strain O157:H7, substrai... gi\|195939394 - gi\|195939394\|ref\|ZP_03084776.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|208805668, gi... - gi\|208805668\|ref\|ZP_03248005.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC42... gi\|254791820, gi... - gi\|254791820\|ref\|YP_003076657.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. TW1... gi\|208814885, gi... - gi\|208814885\|ref\|ZP_03256064.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC40... gi\|189363583, gi... - gi\|189363583\|gb\|EDU82002.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|187767182, gi... - gi\|187767182\|gb\|EDU31026.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189003122, gi... - gi\|189003122\|gb\|EDU72108.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|168786506, gi... - gi\|189373590\|gb\|EDU92006.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC869], ... gi\|168752226, gi... - gi\|188013888\|gb\|EDU52010.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4113],... gi\|189354864, gi... - gi\|189354864\|gb\|EDU73283.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|168764667, gi... - gi\|189365379\|gb\|EDU83795.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|13360153, gi\|... - gi\|15829949\|ref\|NP_308722.1\| apolipoprotein N-acyltransferase [Escherichia coli O157:H7 str. Sakai],...	411.0	[0..1]	[512..1]
gi\|75511302, gi\|... - gi\|75511302\|ref\|ZP_00733996.1\| COG0815: Apolipoprotein N-acyltransferase [Escherichia coli 53638], g... gi\|81244512, gi\|... - gi\|82543101\|ref\|YP_407048.1\| apolipoprotein N-acyltransferase [Shigella boydii Sb227], gi\|81244512\|g...	411.0	[0..1]	[512..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASLIERQ RIRLLLALLF GACGTLAFSP YDVWPAAIIS LMGLQALTFN RRPLQSAAIG  60
   61 FCWGFGLFGS GINWVYVSIA TFGGMPGPVN IFLVVLLAAY LSLYTGLFAG VLSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWPKTTWLRV AIAAPALWQV TEFLRGWVLT GFPWLQFGYS QIDGPLKGLA PIMGVEAINF  60
   61 LLMMVSGLLA LALVKRNWRP LVVAVVLFAL PFPLRYIQWF TPQP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [219-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKTIQVSMVQ GDIPQSLKWD EGQLLNTLKI YYNATAPLMG KSSLIIWPES AITDLEINQQ  60
   61 PFLKALDGEL RDKGSSLVTG IVDARLNKQN RYDTYNTIIT LGKGAPYSYE SADRYNKNHL 120
  121 VPFGEFVPLE SILRPLAPFF DLPMSSFSRG PYIQPPLSAN GIELTAAICY EIILGEQVRD 180
  181 NFRPDTDYLL TISNDAWFGK SIGPWQHFQM ARMRALELAR PLLRSTNNGI TAVIGPQGEI 240
  241 QAMIPQFTRE VLTTNVTPTT GLTPYARTGN WPLWVLTALF GFAAVLMSLR QRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
binding	0.550662194183032	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.472813950465394	bayes_pls_golite062009
protein binding	0.360416829919237	bayes_pls_golite062009
hydrolase activity	0.259754203148441	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: