YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125985567\|ref...
Organism:	Drosophila pseudoobscura pseudoobscura
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125985567|ref....

Description	E-value	Query Range	Subject Range
gi\|30178199, gi\|... - gi\|31202411\|ref\|XP_310154.1\| AGAP009537-PA [Anopheles gambiae str. PEST], gi\|30178199\|gb\|EAA05914.2\|... AGAP009537-PA - cytochrome c\|protein_coding\|3R:35606586:35606912:1\|gene:AGAP009537	160.0	[0..1]	[108..1]
gi\|47157060 - gi\|47157060\|gb\|AAT12410.1\| mitochondrial cytochrome C [Apis mellifera ligustica] CYC_APIME - Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2	160.0	[0..1]	[108..1]
CYC_SCHGR - (P00040) Cytochrome c	158.0	[0..2]	[108..1]
gi\|108879930, gi... - gi\|94468578\|gb\|ABF18138.1\| mitochondrial cytochrome c [Aedes aegypti], gi\|157106248\|ref\|XP_001649238...	158.0	[0..1]	[107..1]
CYC_MANSE - Cytochrome c OS=Manduca sexta PE=1 SV=2	157.0	[0..1]	[108..1]
CYC_SARPE - (P12831) Cytochrome c	156.0	[0..2]	[108..1]
gi\|29841130 - gi\|29841130\|gb\|AAP06143.1\| SJCHGC06082 protein [Schistosoma japonicum]	156.0	[0..1]	[108..1]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2	155.0	[0..6]	[107..1]
gi\|89272026 - gi\|89272026\|emb\|CAJ83237.1\| cytochrome c, somatic [Xenopus tropicalis]	155.0	[0..6]	[107..9]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPAGDVEK GKKLFVQRCA QCHTVEAGGK HKVGPNLHGL IGRKTGQAAG FAYTDANKAK  60
   61 GITWNEDTLF EYLENPKKYI PGTKMIFAGL KKPNERGDLI AYLKSATK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.221849
Match:	2b4zA
Description:	Crystal structure of cytochrome C from bovine heart at 1.5 A resolution.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits