YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17431200
Organism:	Ralstonia solanacearum
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17431200.

Description	E-value	Query Range	Subject Range
gi\|94313639, gi\|... - gi\|94313639\|ref\|YP_586848.1\| hypothetical protein Rmet_4717 [Ralstonia metallidurans CH34], gi\|93357...	249.0	[0..1]	[167..23]
gi\|83725565, gi\|... - gi\|83747793\|ref\|ZP_00944827.1\| Hypothetical Protein RRSL_02215 [Ralstonia solanacearum UW551], gi\|83...	245.0	[0..1]	[172..1]
gi\|7470017 - pir\|\|S74709 hypothetical protein sll1188 - Synechocystis sp. (strain PCC 6803) gi\|16329452, gi\|... - gi\|1651934\|dbj\|BAA16860.1\| sll1188 [Synechocystis sp. PCC 6803], gi\|16329452\|ref\|NP_440180.1\| hypoth...	241.0	[0..8]	[168..6]
gi\|46132274, gi\|... - gi\|73540978\|ref\|YP_295498.1\| hypothetical protein Reut_A1284 [Ralstonia eutropha JMP134], gi\|7211839...	240.0	[0..1]	[167..1]
gi\|91785226, gi\|... - gi\|91785226\|ref\|YP_560432.1\| hypothetical protein Bxe_A0553 [Burkholderia xenovorans LB400], gi\|9168...	238.0	[0..8]	[165..17]
gi\|39995284, gi\|... - gi\|39995284\|ref\|NP_951235.1\| hypothetical protein GSU0173 [Geobacter sulfurreducens PCA], gi\|3998204...	235.0	[0..5]	[168..9]
gi\|18310898, gi\|... - gi\|18310898\|ref\|NP_562832.1\| hypothetical protein CPE1916 [Clostridium perfringens str. 13], gi\|1814...	235.0	[0..6]	[167..4]
gi\|84354455, gi\|... - gi\|84354455\|ref\|ZP_00979361.1\| COG3542: Uncharacterized conserved protein [Burkholderia cenocepacia ...	234.0	[0..1]	[169..1]
gi\|110675668, gi... - gi\|110801021\|ref\|YP_696596.1\| hypothetical protein CPF_2172 [Clostridium perfringens ATCC 13124], gi...	234.0	[0..6]	[167..4]
gi\|56687164, gi\|... - gi\|56752205\|ref\|YP_172906.1\| hypothetical protein syc2196_d [Synechococcus elongatus PCC 6301], gi\|5...	233.0	[0..1]	[166..13]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIVPAAQRL IDRLGLEPHP EGGFYRETYR SEERIHRGVP AVERTACTAI YYLLAEDAYS  60
   61 AWHRIRSDEL WHFHAGDPLN VYVLEDGGAV TTHRLGHAVE DERSTYQAMV PAGRWFAAER 120
  121 VAGAHGYTLV GCTVAPGFEF SEFALAESRA LLESHSAHGD LILRLAAESC RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1yudA
Description:	Crystal structure of hypothetical protein SO0799 from Shewanella oneidensis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits