YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17431071
Organism:	Ralstonia solanacearum
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17431071.

Description	E-value	Query Range	Subject Range
gi\|54030969, gi\|... - gi\|91790597\|ref\|YP_551549.1\| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas sp. JS666], gi\|...	158.0	[0..1]	[143..1]
gi\|30138591, gi\|... - gi\|30248974\|ref\|NP_841044.1\| hypothetical protein NE0971 [Nitrosomonas europaea ATCC 19718], gi\|3013...	150.0	[0..3]	[141..6]
gi\|23129018, gi\|... - gi\|23129018\|ref\|ZP_00110852.1\| COG2764: Uncharacterized protein conserved in bacteria [Nostoc puncti...	149.0	[0..1]	[141..1]
gi\|121606877, gi... - gi\|84714364\|ref\|ZP_01021829.1\| phnB, RSp0601; PhnB protein [Polaromonas naphthalenivorans CJ2], gi\|8...	148.0	[0..1]	[140..16]
gi\|74021576, gi\|... - gi\|89902868\|ref\|YP_525339.1\| 3-demethylubiquinone-9 3-methyltransferase [Rhodoferax ferrireducens T1...	148.0	[0..1]	[139..1]
gi\|116696472, gi... - gi\|116696472\|ref\|YP_842048.1\| hypothetical protein H16_B2536 [Ralstonia eutropha H16], gi\|113530971\|...	147.0	[0..1]	[137..1]
gi\|56478427, gi\|... - gi\|56478427\|ref\|YP_160016.1\| hypothetical protein ebA5268 [Aromatoleum aromaticum EbN1], gi\|56314470...	147.0	[0..1]	[141..1]
gi\|111280010, gi... - gi\|111619589\|ref\|ZP_01406598.1\| Glyoxalase/bleomycin resistance protein/dioxygenase:3-demethylubiqui...	147.0	[0..1]	[141..29]
gi\|83648244, gi\|... - gi\|83648244\|ref\|YP_436679.1\| hypothetical protein HCH_05595 [Hahella chejuensis KCTC 2396], gi\|83636...	146.0	[0..2]	[141..141]
gi\|17736944 - gi\|17736944\|gb\|AAL02404.1\| unknown [Pseudomonas knackmussii]	146.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVQPYLFFE GRCEEALEFY KKTLGAKVDM LMRYKDAPPG AEPKAEQCGG VVPPGDKVMH  60
   61 AAFRIGDTLV MASDGMASGK AEFKGFSLSV DVADEADAER TFKALGDGGQ VSMPLAETFF 120
  121 AKRFGMLVDR FGVMWMVIAP KPM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1u6lA
Description:	crystal structure of a hypothetical protein from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21778090213032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: