YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17429288, gi\|...
Organism:	Ralstonia solanacearum
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17429288, gi|....

Description	E-value	Query Range	Subject Range
gi\|111613237, gi... - gi\|111613237\|ref\|ZP_01400319.1\| hypothetical protein VeisDRAFT_2633 [Verminephrobacter eiseniae EF01...	110.0	[0..1]	[95..1]
gi\|84717804, gi\|... - gi\|84717804\|ref\|ZP_01023614.1\| tISRso8a, RSp0547; ISRSO8-transposase orfA protein [Polaromonas napht...	101.0	[0..1]	[94..1]
gi\|206592391, gi... - gi\|207742964\|ref\|YP_002259356.1\| isrso8-transposase orfa protein [Ralstonia solanacearum IPO1609], g... gi\|83727088, gi\|... - gi\|83748307\|ref\|ZP_00945332.1\| Transposase [Ralstonia solanacearum UW551], gi\|83746338\|ref\|ZP_009433...	100.0	[0..2]	[96..3]
gi\|63257746, gi\|... - gi\|66047039\|ref\|YP_236880.1\| transposase IS3/IS911 [Pseudomonas syringae pv. syringae B728a], gi\|660...	100.0	[0..1]	[96..1]
gi\|67847760, gi\|... - gi\|91788708\|ref\|YP_549660.1\| transposase IS3/IS911 [Polaromonas sp. JS666], gi\|91697933\|gb\|ABE44762....	98.0	[0..1]	[97..1]
gi\|115534855, gi... - gi\|12957038\|emb\|CAC29210.1\| putative transposase [Enterococcus faecalis], gi\|115534855\|ref\|YP_783937...	97.0	[0..1]	[90..1]
gi\|91686025, gi\|... - gi\|91783372\|ref\|YP_558578.1\| putative transposase, ISRSO8 orfA like [Burkholderia xenovorans LB400],...	96.0	[0..2]	[97..3]
gi\|2605927 - gi\|2605927\|gb\|AAC97536.1\| transposase [Enterococcus faecium]	95.0	[0..1]	[90..1]
gi\|93358845, gi\|... - gi\|94314599\|ref\|YP_587808.1\| transposase IS3/IS911 [Ralstonia metallidurans CH34], gi\|94314372\|ref\|Y... gi\|32527035, gi\|... - gi\|38637697\|ref\|NP_942671.1\| putative transposase [Cupriavidus necator], gi\|32527035\|gb\|AAP85785.1\| ... gi\|187926010, gi... - gi\|187926010\|ref\|YP_001892355.1\| transposase IS3/IS911 family protein [Ralstonia pickettii 12J], gi\|... gi\|153888000, gi... - gi\|241665497\|ref\|YP_002983856.1\| transposase IS3/IS911 family protein [Ralstonia pickettii 12D], gi\|... gi\|222873869, gi... - gi\|224166225\|ref\|XP_002338903.1\| predicted protein [Populus trichocarpa], gi\|222873869\|gb\|EEF11000.1... gi\|32527035, gi\|... - gi\|38637697\|ref\|NP_942671.1\| putative transposase [Ralstonia eutropha H16], gi\|32527035\|gb\|AAP85785....	95.0	[0..2]	[96..3]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVPKQSYT AEFKAAAVQR VKDGQGVGAV ARELSVSEQT LRNWMKAEQA GKLGGAGAKV  60
   61 VTPEQMELSR LRAENKRLQM ELEIAKKAAA YFAKDLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2jn6A
Description:	No description for 2jn6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits