YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17430264
Organism:	Ralstonia solanacearum
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17430264.

Description	E-value	Query Range	Subject Range
gi\|36785611, gi\|... - gi\|37526181\|ref\|NP_929525.1\| hypothetical protein plu2268 [Photorhabdus luminescens subsp. laumondii...	174.0	[0..1]	[151..1]
gi\|53756961, gi\|... - gi\|53803200\|ref\|YP_115043.1\| hypothetical protein MCA2639 [Methylococcus capsulatus str. Bath], gi\|5...	165.0	[0..1]	[153..1]
gi\|68525847, gi\|... - gi\|94311280\|ref\|YP_584490.1\| excisionase/Xis, DNA-binding [Ralstonia metallidurans CH34], gi\|9335513... gi\|126194810, gi... - gi\|84326764\|ref\|ZP_00974789.1\| COG1910: Periplasmic molybdate-binding protein/domain [Pseudomonas ae... gi\|118049819, gi... - gi\|221064742\|ref\|ZP_03540847.1\| DNA binding domain protein, excisionase family [Comamonas testostero... gi\|121593669, gi... - gi\|121593669\|ref\|YP_985565.1\| DNA binding domain-containing protein [Acidovorax sp. JS42], gi\|120605... gi\|218771612, gi... - gi\|218891386\|ref\|YP_002440253.1\| DNA binding domain, excisionase family [Pseudomonas aeruginosa LESB... gi\|24461579 - gi\|24461579\|gb\|AAN62150.1\|AF440523_57 putative excisionase [Pseudomonas aeruginosa]	164.0	[0..3]	[153..5]
gi\|68245787, gi\|... - gi\|69259700\|ref\|ZP_00607653.1\| Excisionase/Xis, DNA-binding [Magnetococcus sp. MC-1], gi\|68245787\|gb...	158.0	[0..4]	[153..3]
gi\|26990844, gi\|... - gi\|26990844\|ref\|NP_746269.1\| excisionase domain-containing protein [Pseudomonas putida KT2440], gi\|2...	154.0	[0..7]	[153..10]
gi\|111611664, gi... - gi\|121611078\|ref\|YP_998885.1\| DNA binding domain-containing protein [Verminephrobacter eiseniae EF01...	154.0	[0..10]	[153..11]
gi\|11291440, gi\|... - gi\|3378297\|gb\|AAD03880.1\| putative excisionase [Novosphingobium aromaticivorans], pir\|\|T31156 hypoth... gi\|145322223, gi... - ref\|ZP_00302830.1\| COG1910: Periplasmic molybdate-binding protein/domain [Novosphingobium aromaticiv...	150.0	[0..10]	[149..14]
gi\|94425601, gi\|... - gi\|94495335\|ref\|ZP_01301916.1\| hypothetical protein SKA58_02540 [Sphingomonas sp. SKA58], gi\|9442560...	144.0	[0..10]	[149..14]
gi\|86164323, gi\|... - gi\|87120220\|ref\|ZP_01076115.1\| hypothetical protein MED121_08513 [Marinomonas sp. MED121], gi\|861643...	137.0	[0..1]	[153..19]
gi\|112821561, gi... - gi\|113473881\|ref\|YP_718144.1\| hypothetical protein pCAR3_203 [Sphingomonas sp. KA1], gi\|112821561\|db...	133.0	[0..11]	[145..15]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVSSISKVL PSEEDVTLAR EAGRTLAAVL ATGAAVRQVD IRDSSGRVRS VQMPAAALQL  60
   61 LQDVLDQIEK GCAVSVVPVH AELTTQEAAQ MLGVSRPFFV QMLEKGDIPF HKIGTHRRVR 120
  121 YRDVIDYKKR LDAQRREALE TLAEQAQALD MGY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.53
Match:	1z4hA
Description:	The response regulator TorI belongs to a new family of atypical excisionase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits