YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17429977
Organism:	Ralstonia solanacearum
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17429977.

Description	E-value	Query Range	Subject Range
gi\|254253454, gi... - gi\|84360612\|ref\|ZP_00985310.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|189351722, gi... - gi\|189351722\|ref\|YP_001947350.1\| BolA superfamily transcriptional regulator [Burkholderia multivoran... gi\|167587700 - gi\|167587700\|ref\|ZP_02380088.1\| BolA family protein [Burkholderia ubonensis Bu] gi\|221172870, gi... - gi\|221207282\|ref\|ZP_03580292.1\| BolA/YrbA family protein [Burkholderia multivorans CGD2], gi\|2211728... gi\|221201643, gi... - gi\|221201643\|ref\|ZP_03574681.1\| BolA/YrbA family protein [Burkholderia multivorans CGD2M], gi\|221178...	117.0	[0..1]	[77..1]
gi\|83748213, gi\|... - gi\|83748213\|ref\|ZP_00945240.1\| BolA protein [Ralstonia solanacearum UW551], gi\|83725181\|gb\|EAP72332.... gi\|206595917, gi... - gi\|207744511\|ref\|YP_002260903.1\| hypothetical protein RSIPO_02721 [Ralstonia solanacearum IPO1609], ... gi\|206587000, gi... - gi\|207721833\|ref\|YP_002252271.1\| hypothetical protein RSMK02113 [Ralstonia solanacearum MolK2], gi\|2...	117.0	[0..1]	[76..1]
gi\|254190376, gi... - gi\|67756137\|ref\|ZP_00495024.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|100122774, gi... - gi\|67760290\|ref\|ZP_00499013.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|167001591, gi... - gi\|243062600\|gb\|EES44786.1\| BolA/YrbA family protein [Burkholderia mallei PRL-20], gi\|167001591\|ref\|... gi\|67737941, gi\|... - gi\|67737941\|ref\|ZP_00488657.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|84519875, gi\|... - gi\|84519875\|ref\|ZP_01007013.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|83654324, gi\|... - gi\|83720499\|ref\|YP_443500.1\| BolA/YrbA family protein-related protein [Burkholderia thailandensis E2... gi\|167721490 - gi\|167721490\|ref\|ZP_02404726.1\| BolA/YrbA family protein [Burkholderia pseudomallei DM98] gi\|76811887, gi\|... - gi\|76811887\|ref\|YP_335060.1\| BolA-like protein [Burkholderia pseudomallei 1710b], gi\|76581340\|gb\|ABA... gi\|167817673 - gi\|167817673\|ref\|ZP_02449353.1\| BolA/YrbA family protein [Burkholderia pseudomallei 91] gi\|85066101 - gi\|85066101\|ref\|ZP_01026954.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|167582543 - gi\|167582543\|ref\|ZP_02375417.1\| BolA/YrbA family protein [Burkholderia thailandensis TXDOH] gi\|254357279, gi... - gi\|87314744\|ref\|ZP_01095783.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|167620658 - gi\|167620658\|ref\|ZP_02389289.1\| BolA/YrbA family protein [Burkholderia thailandensis Bt4] gi\|100233962, gi... - gi\|83678662\|ref\|ZP_00940386.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|100916380, gi... - gi\|67635777\|ref\|ZP_00434729.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|83620145, gi\|... - gi\|83620145\|ref\|ZP_00930568.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|194528186, gi... - gi\|83626129\|ref\|ZP_00936355.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|134245412, gi... - gi\|134283217\|ref\|ZP_01769918.1\| BolA/YrbA family protein [Burkholderia pseudomallei 305], gi\|1342454... gi\|67646953, gi\|... - gi\|67646953\|ref\|ZP_00445203.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|161372224, gi... - gi\|90293112\|ref\|ZP_01212716.1\| hypothetical protein Bpse17_02002181 [Burkholderia pseudomallei 1710a... gi\|238522550, gi... - gi\|67641597\|ref\|ZP_00440373.1\| conserved domain protein [Burkholderia mallei GB8 horse 4], gi\|238522... gi\|194505065, gi... - gi\|99910784\|ref\|ZP_01317749.1\| hypothetical protein Bpse1_03002896 [Burkholderia pseudomallei 1655],... gi\|82529996, gi\|... - gi\|82529996\|ref\|ZP_00889233.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|161358264, gi... - gi\|82533556\|ref\|ZP_00892620.1\| hypothetical protein Bpse110_02005160 [Burkholderia pseudomallei 1106... gi\|167904538 - gi\|167904538\|ref\|ZP_02491743.1\| BolA/YrbA family protein [Burkholderia pseudomallei NCTC 13177] gi\|194317058, gi... - gi\|254175168\|ref\|ZP_04881829.1\| BolA/YrbA family protein [Burkholderia mallei ATCC 10399], gi\|194317... gi\|167826071 - gi\|167826071\|ref\|ZP_02457542.1\| BolA/YrbA family protein [Burkholderia pseudomallei 9] gi\|167847577 - gi\|167847577\|ref\|ZP_02473085.1\| BolA/YrbA family protein [Burkholderia pseudomallei B7210] gi\|217424878, gi... - gi\|217424878\|ref\|ZP_03456375.1\| BolA/YrbA family protein [Burkholderia pseudomallei 576], gi\|2173923... gi\|237814069, gi... - gi\|237814069\|ref\|YP_002898520.1\| hypothetical protein GBP346_A3854 [Burkholderia pseudomallei MSHR34... gi\|226198230, gi... - gi\|226198230\|ref\|ZP_03793801.1\| BolA/YrbA family protein [Burkholderia pseudomallei Pakistan 9], gi\|... gi\|53720749, gi\|... - gi\|53720749\|ref\|YP_109735.1\| BolA-like protein [Burkholderia pseudomallei K96243], gi\|52211163\|emb\|C... gi\|52427692, gi\|... - gi\|53724269\|ref\|YP_104238.1\| BolA/YrbA family protein [Burkholderia mallei ATCC 23344], gi\|52427692\|... gi\|124294432, gi... - gi\|124386412\|ref\|YP_001027764.1\| BolA/YrbA family protein [Burkholderia mallei NCTC 10229], gi\|12429...	116.0	[0..1]	[77..1]
gi\|170699515, gi... - gi\|170699515\|ref\|ZP_02890557.1\| BolA family protein [Burkholderia ambifaria IOP40-10], gi\|170135602\|... gi\|171991931, gi... - gi\|172059414\|ref\|YP_001807066.1\| BolA family protein [Burkholderia ambifaria MC40-6], gi\|171991931\|g... gi\|171316479, gi... - gi\|171316479\|ref\|ZP_02905696.1\| BolA family protein [Burkholderia ambifaria MEX-5], gi\|171098313\|gb\|... gi\|169814998, gi... - gi\|170731756\|ref\|YP_001763703.1\| BolA family protein [Burkholderia cenocepacia MC0-3], gi\|169814998\|... gi\|206558715, gi... - gi\|206558715\|ref\|YP_002229475.1\| BolA-like protein [Burkholderia cenocepacia J2315], gi\|198034752\|em... gi\|254246532, gi... - gi\|84356588\|ref\|ZP_00981430.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Burkh... gi\|67659439, gi\|... - gi\|67659439\|ref\|ZP_00456801.1\| BolA-like protein [Burkholderia cenocepacia AU 1054], gi\|67092996\|gb\|... gi\|67103122, gi\|... - gi\|67663279\|ref\|ZP_00460562.1\| BolA-like protein [Burkholderia cenocepacia HI2424], gi\|67103122\|gb\|E... gi\|134294513, gi... - gi\|67545740\|ref\|ZP_00423660.1\| BolA-like protein [Burkholderia vietnamiensis G4], gi\|67533069\|gb\|EAM... gi\|72607848, gi\|... - gi\|74019431\|ref\|ZP_00690047.1\| BolA-like protein [Burkholderia ambifaria AMMD], gi\|72607848\|gb\|EAO43... gi\|77965742, gi\|... - gi\|78064997\|ref\|YP_367766.1\| BolA-like protein [Burkholderia sp. 383], gi\|77965742\|gb\|ABB07122.1\| Bo...	116.0	[0..1]	[77..1]
gi\|33574880 - gi\|33574880\|emb\|CAE39543.1\| BolA-like protein [Bordetella parapertussis] gi\|33598750 - gi\|33598750\|ref\|NP_886393.1\| BolA-like protein [Bordetella parapertussis 12822] gi\|33577949, gi\|... - gi\|33603824\|ref\|NP_891384.1\| BolA-like protein [Bordetella bronchiseptica RB50], gi\|33577949\|emb\|CAE... gi\|33564698, gi\|... - gi\|33594622\|ref\|NP_882266.1\| BolA-like protein [Bordetella pertussis Tohama I], gi\|33564698\|emb\|CAE4...	115.0	[0..1]	[76..3]
gi\|91689338, gi\|... - gi\|91785384\|ref\|YP_560590.1\| putative morphogene protein, BolA [Burkholderia xenovorans LB400], gi\|9...	115.0	[0..1]	[77..1]
gi\|73542798, gi\|... - gi\|73542798\|ref\|YP_297318.1\| BolA-like protein [Ralstonia eutropha JMP134], gi\|72120211\|gb\|AAZ62474....	114.0	[0..1]	[77..1]
gi\|113528142, gi... - gi\|113869366\|ref\|YP_727855.1\| BolA family transcriptional regulator [Ralstonia eutropha H16], gi\|113...	114.0	[0..1]	[77..1]
gi\|93356034, gi\|... - gi\|94312182\|ref\|YP_585392.1\| BolA-like protein [Ralstonia metallidurans CH34], gi\|93356034\|gb\|ABF101...	114.0	[0..1]	[77..1]
gi\|115424368, gi... - gi\|187479781\|ref\|YP_787806.1\| BolA-like protein [Bordetella avium 197N], gi\|115424368\|emb\|CAJ50921.1...	110.0	[0..1]	[76..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTPEQIKQ YIEAGLPCEH LEVEGDGQHF FATIVSAQFE GKRLIQRHQL VYAALGDRMR  60
   61 AEIHALSMKT LTPAEWRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1xs3A
Description:	Solution Structure Analysis of the XC975 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits