YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17429106
Organism:	Ralstonia solanacearum
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17429106.

Description	E-value	Query Range	Subject Range
gi\|91686542, gi\|... - gi\|91782588\|ref\|YP_557794.1\| hypothetical protein Bxe_A3240 [Burkholderia xenovorans LB400], gi\|9168...	238.0	[0..1]	[193..1]
gi\|78067070, gi\|... - gi\|78067070\|ref\|YP_369839.1\| hypothetical protein Bcep18194_A5601 [Burkholderia sp. 383], gi\|7796781...	237.0	[0..1]	[187..1]
LOGH_PSEAE - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Pseudomonas aeruginosa (strain ... Y4923_PSEAE, YDC... - (P48636) Hypothetical protein PA4923, UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=...	236.0	[0..1]	[190..3]
gi\|254238359, gi... - gi\|84317537\|ref\|ZP_00965977.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Pseudomo...	236.0	[0..1]	[190..3]
gi\|116053072, gi... - gi\|53726499\|ref\|ZP_00141397.2\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Pseudomo...	236.0	[0..1]	[190..3]
gi\|49082752 - gi\|49082752\|gb\|AAT50776.1\| PA4923 [synthetic construct]	236.0	[0..1]	[190..3]
gi\|152988785, gi... - gi\|94417534\|ref\|ZP_01297352.1\| hypothetical protein PaerP_01000851 [Pseudomonas aeruginosa PA7], gi\|...	235.0	[0..1]	[190..3]
gi\|87240936 - gi\|87240936\|gb\|ABD32794.1\| Conserved hypothetical protein 730 [Medicago truncatula]	234.0	[0..2]	[183..14]
LOG3_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 S...	234.0	[0..2]	[185..14]
gi\|72607619, gi\|... - gi\|74019601\|ref\|ZP_00690215.1\| Conserved hypothetical protein 730 [Burkholderia ambifaria AMMD], gi\|...	234.0	[0..1]	[187..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSICVYCGS SPGERPEYKA GAIALGNEMV GRGLTLVYGG GNIGLMGIVA DAVLRGGNPV  60
   61 IGIIPKSLVR KEVGHKDVTE LHIVDSMHQR KQMMADRADA FIAMPGGIGT YEELFETFTW 120
  121 LQLGYHGKPI GLLNVAGFYD KLLAFIDHAV EEGFLKRHHA DLLHVSADPA ELIDRLERAP 180
  181 RHPVDKWAER RERT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	2a33A
Description:	X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.459062360506835	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: