YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17546740
Organism:	Ralstonia solanacearum GMI1000
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17546740.

Description	E-value	Query Range	Subject Range
gi\|83748056, gi\|... - gi\|83748056\|ref\|ZP_00945085.1\| Glutathione S-transferase [Ralstonia solanacearum UW551], gi\|83725242... gi\|207742775, gi... - gi\|207742775\|ref\|YP_002259167.1\| glutathione-s-transferase protein [Ralstonia solanacearum IPO1609],...	237.0	[0..1]	[230..1]
gi\|67104621, gi\|... - gi\|67662036\|ref\|ZP_00459327.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	236.0	[0..1]	[230..21]
gi\|45519430, gi\|... - gi\|73540704\|ref\|YP_295224.1\| glutathione S-transferase [Ralstonia eutropha JMP134], gi\|72118117\|gb\|A...	236.0	[0..1]	[229..1]
gi\|116648338, gi... - gi\|116690249\|ref\|YP_835872.1\| glutathione S-transferase domain-containing protein [Burkholderia ceno... gi\|67660951, gi\|... - gi\|67660951\|ref\|ZP_00458284.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	235.0	[0..1]	[230..1]
gi\|48770838, gi\|... - gi\|94309912\|ref\|YP_583122.1\| glutathione S-transferase-like protein [Ralstonia metallidurans CH34], ...	235.0	[0..1]	[230..1]
gi\|194558663, gi... - gi\|84355283\|ref\|ZP_00980171.1\| COG0625: Glutathione S-transferase [Burkholderia cenocepacia PC184], ...	234.0	[0..1]	[230..1]
gi\|113525886, gi... - gi\|113867110\|ref\|YP_725599.1\| glutathione S-transferase [Ralstonia eutropha H16], gi\|113525886\|emb\|C...	232.0	[0..1]	[229..1]
gi\|84362371 - gi\|84362371\|ref\|ZP_00986998.1\| COG0625: Glutathione S-transferase [Burkholderia dolosa AUO158]	232.0	[0..1]	[230..6]
gi\|67548282, gi\|... - gi\|67548282\|ref\|ZP_00426173.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	232.0	[0..1]	[229..322]
gi\|46310733, gi\|... - gi\|78067025\|ref\|YP_369794.1\| glutathione S-transferase-like protein [Burkholderia sp. 383], gi\|77967...	232.0	[0..1]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVYSWATP NGHKVHIMLE ECGLPYRVHA VNIGAGDQFK PEFLKISPNN KIPAIVDQDG  60
   61 PDGQPISLFE SGAILLYLAG KTGKFLPEDV RGKYEVLQWL MFQMGGVGPM LGQTHHFRIY 120
  121 APEKIDYAIN RYTNEAKRLY GVIDKRLSES KYLGGPDYSI ADIATWPWLR SWQNQGIVLS 180
  181 DYPRLQRWFE AIEARPAVQR AVKVLAKERS PLQDDKEREV LFGATQYARR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1jzrA
Description:	Yeast prion protein ure2p, nitrogen regulation fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.66884588063322	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
glutathione binding	2.07086805531749	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
glutathione transferase activity	1.85683051472829	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
selenium binding	1.57446915214149	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
protein disulfide isomerase activity	0.866317336989678	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	0.866317336989678	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	0.748123488370707	bayes_pls_golite062009
binding	0.704132579378598	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	0.250605261094039	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: