YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17546714
Organism:	Ralstonia solanacearum GMI1000
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17546714.

Description	E-value	Query Range	Subject Range
gi\|113873568, gi... - gi\|113873568\|ref\|ZP_01413697.1\| Succinate dehydrogenase hydrophobic anchor subunit-like [Sinorhizobi...	149.0	[0..3]	[121..155]
gi\|206594196, gi... - gi\|207742802\|ref\|YP_002259194.1\| transmembrane succinate dehydrogenase (hydrophobic membrane anchor ... gi\|206589112, gi... - gi\|207723906\|ref\|YP_002254304.1\| transmembrane succinate dehydrogenase (hydrophobic membrane anchor ... gi\|83725268, gi\|... - gi\|83748082\|ref\|ZP_00945111.1\| Succinate dehydrogenase membrane anchor subunit [Ralstonia solanacear...	130.0	[0..1]	[121..1]
gi\|53762323, gi\|... - gi\|73542010\|ref\|YP_296530.1\| succinate dehydrogenase subunit D [Ralstonia eutropha JMP134], gi\|72119...	129.0	[0..1]	[121..1]
gi\|33320237 - gi\|33320237\|gb\|AAQ05855.1\| SdhD protein [Cupriavidus necator] gi\|113868592, gi... - gi\|113868592\|ref\|YP_727081.1\| succinate dehydrogenase (hydrophobic anchor subunit) [Ralstonia eutrop...	128.0	[0..1]	[121..1]
gi\|91777243, gi\|... - gi\|91777243\|ref\|YP_552451.1\| succinate dehydrogenase subunit D [Burkholderia xenovorans LB400], gi\|9...	127.0	[0..2]	[121..3]
gi\|48767506, gi\|... - gi\|94311421\|ref\|YP_584631.1\| succinate dehydrogenase subunit D [Ralstonia metallidurans CH34], gi\|93...	126.0	[0..1]	[121..1]
gi\|23502754, gi\|... - gi\|23502754\|ref\|NP_698881.1\| succinate dehydrogenase, hydrophobic membrane anchor protein, putative ...	126.0	[0..3]	[121..9]
gi\|13473608, gi\|... - gi\|14024358\|dbj\|BAB50962.1\| succinate dehydrogenase cytochrome b small subunit [Mesorhizobium loti M...	125.0	[0..3]	[121..10]
gi\|110635574, gi... - gi\|69274736\|ref\|ZP_00610648.1\| Succinate dehydrogenase, cytochrome b subunit [Mesorhizobium sp. BNC1...	124.0	[0..3]	[121..5]
gi\|254253641, gi... - gi\|84360332\|ref\|ZP_00985038.1\| COG2142: Succinate dehydrogenase, hydrophobic anchor subunit [Burkhol... gi\|221203640, gi... - gi\|221203640\|ref\|ZP_03576658.1\| succinate dehydrogenase, hydrophobic membrane anchor protein [Burkho... gi\|221167530, gi... - gi\|221212431\|ref\|ZP_03585408.1\| succinate dehydrogenase, hydrophobic membrane anchor protein [Burkho... gi\|160345240, gi... - gi\|189352634\|ref\|YP_001948261.1\| succinate dehydrogenase hydrophobic membrane anchor protein [Burkho... gi\|221183521, gi... - gi\|221196967\|ref\|ZP_03570014.1\| succinate dehydrogenase, hydrophobic membrane anchor protein [Burkho... gi\|134293106, gi... - gi\|67548766\|ref\|ZP_00426648.1\| Succinate dehydrogenase, cytochrome b subunit [Burkholderia vietnamie...	124.0	[0..2]	[121..3]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNNIGPKR LVVGAHYGLK DFLAQRVTAV IMAVYTIVLL AAFLFSKDTS YQSWAGLFAN  60
   61 QWMKLLTFLA FLSLTYHAWI GVRDIWMDYV KPVAVRLTLQ VLTILWLVGC AGYAAQILWR 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.045757
Match:	1nekD
Description:	Succinate dehydrogenase subunit SdhD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: