YRC Public Data Repository - Protein Structure Prediction

Protein:	LEUD_RALSO
Organism:	Ralstonia solanacearum GMI1000
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUD_RALSO.

Description	E-value	Query Range	Subject Range
gi\|28971658 - gi\|28971658\|dbj\|BAC65258.1\| 3-isopropylmalate dehydratase small subunit [Burkholderia multivorans] LEUD_BURM1 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN...	292.0	[0..1]	[216..1]
LEUD_BURA4 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia ambifaria (strain MC40-6) GN=leuD PE=3 S... gi\|170701953, gi... - gi\|170701953\|ref\|ZP_02892876.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia ambifaria... LEUD_BURCM - 3-isopropylmalate dehydratase small subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) G...	292.0	[0..1]	[216..1]
gi\|134136307, gi... - gi\|67547368\|ref\|ZP_00425272.1\| 3-isopropylmalate dehydratase small subunit [Burkholderia vietnamiens...	291.0	[0..1]	[216..11]
gi\|167615400 - gi\|167615400\|ref\|ZP_02384035.1\| isopropylmalate isomerase small subunit [Burkholderia thailandensis ... gi\|167577239 - gi\|167577239\|ref\|ZP_02370113.1\| isopropylmalate isomerase small subunit [Burkholderia thailandensis ... LEUD_BURTA - 3-isopropylmalate dehydratase small subunit OS=Burkholderia thailandensis (strain E264 / ATCC 700388...	289.0	[0..1]	[216..1]
gi\|194564636, gi... - gi\|84360343\|ref\|ZP_00985049.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia do...	289.0	[0..1]	[216..1]
gi\|167820645 - gi\|167820645\|ref\|ZP_02452325.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei 9... gi\|167829006 - gi\|167829006\|ref\|ZP_02460477.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei 9... gi\|167724500 - gi\|167724500\|ref\|ZP_02407736.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei D... gi\|167743460 - gi\|167743460\|ref\|ZP_02416234.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei 1... gi\|134278287, gi... - gi\|134278287\|ref\|ZP_01765001.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia pseudomal... gi\|167907421 - gi\|167907421\|ref\|ZP_02494626.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei N... gi\|235001708, gi... - gi\|237509503\|ref\|ZP_04522218.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia pseudomal... gi\|167923598 - gi\|167923598\|ref\|ZP_02510689.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei B... gi\|225932367, gi... - gi\|226195882\|ref\|ZP_03791469.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia pseudomal... gi\|167850481 - gi\|167850481\|ref\|ZP_02475989.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei B... gi\|167899076 - gi\|167899076\|ref\|ZP_02486477.1\| isopropylmalate isomerase small subunit [Burkholderia pseudomallei 7... LEUD_BURMA - 3-isopropylmalate dehydratase small subunit OS=Burkholderia mallei GN=leuD PE=3 SV=1 LEUD_BURPS - 3-isopropylmalate dehydratase small subunit OS=Burkholderia pseudomallei GN=leuD PE=3 SV=1 gi\|166999991, gi... - gi\|243063948\|gb\|EES46134.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia mallei PRL-20... LEUD_BURPS - 3-isopropylmalate dehydratase small subunit OS=Burkholderia pseudomallei (strain K96243) GN=leuD PE=... gi\|254176174, gi... - gi\|254176174\|ref\|ZP_04882832.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia mallei AT... gi\|217422284, gi... - gi\|217422284\|ref\|ZP_03453787.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia pseudomal... LEUD_BURP1 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia pseudomallei (strain 1710b) GN=leuD PE=3... LEUD_BURMA - 3-isopropylmalate dehydratase small subunit OS=Burkholderia mallei (strain ATCC 23344) GN=leuD PE=3 ... LEUD_BURP6 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia pseudomallei (strain 668) GN=leuD PE=3 S... LEUD_BURMS - 3-isopropylmalate dehydratase small subunit OS=Burkholderia mallei (strain SAVP1) GN=leuD PE=3 SV=1 gi\|194501378, gi... - gi\|99911166\|ref\|ZP_01318082.1\| hypothetical protein Bpse1_03002592 [Burkholderia pseudomallei 1655],... gi\|161368450, gi... - gi\|90293668\|ref\|ZP_01213267.1\| hypothetical protein Bpse17_02001522 [Burkholderia pseudomallei 1710a... LEUD_BURM9 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia mallei (strain NCTC 10229) GN=leuD PE=3 ... gi\|85064269 - gi\|85064269\|ref\|ZP_01025123.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ma... gi\|87318149, gi\|... - gi\|87318149\|ref\|ZP_01099153.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ma... gi\|67755667, gi\|... - gi\|67755667\|ref\|ZP_00494559.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ps... gi\|100126390, gi... - gi\|67763319\|ref\|ZP_00502015.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ps... gi\|194524776, gi... - gi\|83617139\|ref\|ZP_00927671.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ma... gi\|83624850, gi\|... - gi\|83624850\|ref\|ZP_00935090.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ma... LEUD_BURP0 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia pseudomallei (strain 1106a) GN=leuD PE=3... gi\|82538057, gi\|... - gi\|90662410\|ref\|ZP_01250244.1\| hypothetical protein Bpse110_02005632 [Burkholderia pseudomallei 1106... gi\|238520130, gi... - gi\|67639572\|ref\|ZP_00438418.1\| 3-isopropylmalate dehydratase, small subunit [Burkholderia mallei GB8... LEUD_BURM7 - 3-isopropylmalate dehydratase small subunit OS=Burkholderia mallei (strain NCTC 10247) GN=leuD PE=3 ... gi\|194567364, gi... - gi\|83675705\|ref\|ZP_00937529.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ps... gi\|100917225, gi... - gi\|67637609\|ref\|ZP_00436548.1\| COG0066: 3-isopropylmalate dehydratase small subunit [Burkholderia ma...	289.0	[0..1]	[216..1]
gi\|78062979, gi\|... - gi\|78062979\|ref\|YP_372887.1\| isopropylmalate isomerase small subunit [Burkholderia sp. 383], gi\|7797...	286.0	[0..1]	[216..1]
gi\|240128364 - gi\|240128364\|ref\|ZP_04741025.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae SK-93... gi\|239999084 - gi\|239999084\|ref\|ZP_04719008.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae 35/02... gi\|240014009 - gi\|240014009\|ref\|ZP_04720922.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae DGI18... gi\|240113062 - gi\|240113062\|ref\|ZP_04727552.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae MS11] gi\|240115817 - gi\|240115817\|ref\|ZP_04729879.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID18... gi\|240016450 - gi\|240016450\|ref\|ZP_04722990.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae FA614... gi\|240080569 - gi\|240080569\|ref\|ZP_04725112.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae FA19] gi\|240123665 - gi\|240123665\|ref\|ZP_04736621.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID33... gi\|240125855 - gi\|240125855\|ref\|ZP_04738741.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae SK-92... gi\|240118115 - gi\|240118115\|ref\|ZP_04732177.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID1] LEUD_NEIG1 - 3-isopropylmalate dehydratase small subunit OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) ... gi\|240121575 - gi\|240121575\|ref\|ZP_04734537.1\| isopropylmalate isomerase small subunit [Neisseria gonorrhoeae PID24...	286.0	[0..1]	[212..1]
gi\|58580560, gi\|... - gi\|58580560\|ref\|YP_199576.1\| isopropylmalate isomerase small subunit [Xanthomonas oryzae pv. oryzae ...	285.0	[0..1]	[214..41]
gi\|11269414 - pir\|\|C81836 probable 3-isopropylmalate dehydratase (EC 4.2.1.33) small chain NMA1452 [imported] - Ne... LEUD_NEIMA - 3-isopropylmalate dehydratase small subunit OS=Neisseria meningitidis serogroup A GN=leuD PE=3 SV=1 LEUD_NEIMA - 3-isopropylmalate dehydratase small subunit OS=Neisseria meningitidis serogroup A / serotype 4A (str...	284.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFTIHTGL VAPLDRENVD TDAIIPKQFL KSIKRTGFGP NLFDEWRYKD VGEPGQDNSK  60
   61 RPLNPDFVLN QPRYQGASVL LARKNFGCGS SREHAPWALQ QYGFRAIIAP SFADIFFNNC 120
  121 FKNGLLPIVL TESQVDHLFN ETQAFTGYQL TVDLDKQVVV TPGGTAYPFD VTAFRKYCLL 180
  181 NGFDDIGLTL RYADQIKAYE AQRLAKMPWL AHKLVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	2hcuA
Description:	No description for 2hcuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits