YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000028216
Organism:	Pan troglodytes
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000028216.

Description	E-value	Query Range	Subject Range
gi\|109502196 - gi\|109502196\|ref\|XP_001069423.1\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding prot...	3.0E-67	[6..204]	[246..444]
gi\|114587617 - gi\|114587617\|ref\|XP_528705.2\| PREDICTED: similar to THO complex 7 homolog (Drosophila) [Pan troglody...	2.0E-65	[5..204]	[270..469]
gi\|109037775 - gi\|109037775\|ref\|XP_001090043.1\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding prot...	2.0E-62	[4..204]	[159..359]
gi\|48146863 - gi\|48146863\|emb\|CAG33654.1\| NIF3L1BP1 [Homo sapiens]	2.0E-56	[1..204]	[1..204]
THOC7_MOUSE - THO complex subunit 7 homolog OS=Mus musculus GN=Thoc7 PE=1 SV=2	2.0E-56	[1..204]	[1..204]
gi\|73985141 - gi\|73985141\|ref\|XP_533771.2\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding protein ...	2.0E-56	[4..204]	[34..234]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVTDDEVI RKRLLIDGDG AGDDRRINLL VKSFIKWCNS GSQEEGYSQY QRMLSTLSQC  60
   61 EFSMGKTLLV YDMNLREMEN YEKIYKEIEC SIAGAHEKIA ECKKQILQAK RIRKNRQEYD 120
  121 ALAKVIQHHP DRHETLKELE ALGKELEHLS HIKESVEDKL ELRRKQFHVL LSTIHELQQT 180
  181 LENDEKLSEV EEAQEASMET DPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	2dfsA
Description:	No description for 2dfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits