YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17546506
Organism:	Ralstonia solanacearum GMI1000
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17546506.

Description	E-value	Query Range	Subject Range
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	325.0	[0..1]	[265..1]
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	323.0	[0..1]	[265..1]
gi\|206594513, gi... - gi\|207743116\|ref\|YP_002259508.1\| tatd-related deoxyribonuclease; protein [Ralstonia solanacearum IPO... gi\|83749499, gi\|... - gi\|83749499\|ref\|ZP_00946489.1\| Hypothetical Protein RRSL_00548 [Ralstonia solanacearum UW551], gi\|83...	321.0	[0..1]	[267..1]
gi\|113526360, gi... - gi\|113867584\|ref\|YP_726073.1\| Mg-dependent DNase [Ralstonia eutropha H16], gi\|113526360\|emb\|CAJ92705...	317.0	[0..1]	[267..1]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	317.0	[0..1]	[265..1]
gi\|170707566, gi... - gi\|170707566\|ref\|ZP_02898019.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0389], gi\|1... gi\|177655347, gi... - gi\|177655347\|ref\|ZP_02936876.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0174], gi\|1... gi\|190568989, gi... - gi\|190568989\|ref\|ZP_03021890.1\| deoxyribonuclease, TatD family [Bacillus anthracis Tsiankovskii-I], ... gi\|196036356, gi... - gi\|196036356\|ref\|ZP_03103753.1\| deoxyribonuclease, TatD family [Bacillus cereus W], gi\|195990986\|gb\|... gi\|196027406, gi... - gi\|196041786\|ref\|ZP_03109076.1\| deoxyribonuclease, TatD family [Bacillus cereus NVH0597-99], gi\|1960... gi\|218535153, gi... - gi\|218901240\|ref\|YP_002449074.1\| deoxyribonuclease, TatD family [Bacillus cereus AH820], gi\|21853515... gi\|164711717, gi... - gi\|165872589\|ref\|ZP_02217221.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0488], gi\|1... gi\|167635090, gi... - gi\|167635090\|ref\|ZP_02393407.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0442], gi\|1... gi\|167510519, gi... - gi\|167641534\|ref\|ZP_02399782.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0193], gi\|1... gi\|170667141, gi... - gi\|170688917\|ref\|ZP_02880119.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0465], gi\|1... gi\|254762418 - gi\|254762418\|ref\|ZP_05214260.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Aust... gi\|254756362 - gi\|254756362\|ref\|ZP_05208391.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Voll... gi\|254744657 - gi\|254744657\|ref\|ZP_05202336.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Krug... gi\|254733575 - gi\|254733575\|ref\|ZP_05191296.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. West... gi\|254682334 - gi\|254682334\|ref\|ZP_05146195.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. CNEV... gi\|229604431, gi... - gi\|229604431\|ref\|YP_002864690.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0248], gi\|... gi\|229119702, gi... - gi\|229119702\|ref\|ZP_04248964.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus 95/8201], gi... gi\|49477127, gi\|... - gi\|49477127\|ref\|YP_034393.1\| TatD related DNase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|229089171, gi... - gi\|229089171\|ref\|ZP_04220453.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus Rock3-42], g... gi\|228815803, gi... - gi\|228943846\|ref\|ZP_04106232.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228828094, gi... - gi\|228931542\|ref\|ZP_04094449.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228912779, gi... - gi\|228912779\|ref\|ZP_04076427.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|227002938, gi... - gi\|227812712\|ref\|YP_002812721.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. CDC 684], g... gi\|49177000, gi\|... - gi\|49183073\|ref\|YP_026325.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Sterne], gi\|4917... gi\|47500440, gi\|... - gi\|47525292\|ref\|YP_016641.1\| TatD family deoxyribonuclease [Bacillus anthracis str. 'Ames Ancestor']... gi\|30253550, gi\|... - gi\|30260229\|ref\|NP_842606.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Ames], gi\|302535... gi\|21398002, gi\|... - gi\|65317499\|ref\|ZP_00390458.1\| COG0084: Mg-dependent DNase [Bacillus anthracis str. A2012], ref\|NP_6...	316.0	[0..1]	[263..1]
gi\|95133324, gi\|... - gi\|95930672\|ref\|ZP_01313406.1\| TatD-related deoxyribonuclease [Desulfuromonas acetoxidans DSM 684], ...	316.0	[0..2]	[263..6]
gi\|89207208, gi\|... - gi\|89207208\|ref\|ZP_01185754.1\| TatD-related deoxyribonuclease [Bacillus weihenstephanensis KBAB4], g... gi\|229131047, gi... - gi\|229131047\|ref\|ZP_04259960.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST196],... gi\|228751693, gi... - gi\|229009549\|ref\|ZP_04166776.1\| Uncharacterized deoxyribonuclease yabD [Bacillus mycoides DSM 2048],... gi\|229165028, gi... - gi\|229165028\|ref\|ZP_04292824.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus AH621], gi\|2...	314.0	[0..1]	[263..1]
gi\|217066631, gi... - gi\|217957615\|ref\|YP_002336157.1\| deoxyribonuclease, TatD family [Bacillus cereus AH187], gi\|21706663... gi\|229136886, gi... - gi\|229136886\|ref\|ZP_04265514.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST26], ... gi\|222093809, gi... - gi\|222093809\|ref\|YP_002527858.1\| TatD related DNase [Bacillus cereus Q1], gi\|221237856\|gb\|ACM10566.1... gi\|228983295, gi... - gi\|228983295\|ref\|ZP_04143509.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|206743852, gi... - gi\|206977946\|ref\|ZP_03238833.1\| deoxyribonuclease, TatD family [Bacillus cereus H3081.97], gi\|206743... gi\|228629622, gi... - gi\|229153818\|ref\|ZP_04281949.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus ATCC 4342], ... gi\|47569888, gi\|... - gi\|47569888\|ref\|ZP_00240555.1\| sec-independent secretion protein tatD [Bacillus cereus G9241], gi\|47...	314.0	[0..1]	[263..1]
gi\|72118544, gi\|... - gi\|73541131\|ref\|YP_295651.1\| TatD-related deoxyribonuclease [Ralstonia eutropha JMP134], gi\|72118544...	313.0	[0..2]	[267..3]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVDSHCHIN FPDLRARLPE LLAHMRENRV THALCISVTL EDFPSVLEIA EQEPNIYATV  60
   61 GVHPDAEADL EEGTRIEEPT LERLLALADH PRVVGIGETG LDYYRLNGRS VADMEWQRER 120
  121 FRTHIRASRQ TGKPLVIHTR SAADDTLAIM REEGAEAARG VMHCFTETWD VAKAALDLGF 180
  181 YISFSGIVTF KSAADLQETA RKVPLDRMLI ETDSPYLAPV PFRGKTNEPA YVRHVGECLA 240
  241 TLRGEPLEHI ASATTENFFR LFNAIPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.39794
Match:	2gzxA
Description:	No description for 2gzxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits