YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17428797
Organism:	Ralstonia solanacearum
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17428797.

Description	E-value	Query Range	Subject Range
gi\|94310770, gi\|... - gi\|94310770\|ref\|YP_583980.1\| hypothetical protein Rmet_1832 [Ralstonia metallidurans CH34], gi\|93354...	364.0	[0..1]	[271..1]
gi\|45519033, gi\|... - gi\|73541124\|ref\|YP_295644.1\| hypothetical protein Reut_A1430 [Ralstonia eutropha JMP134], gi\|7211853...	359.0	[0..1]	[271..1]
gi\|206594520, gi... - gi\|207743123\|ref\|YP_002259515.1\| hypothetical protein RSIPO_01290 [Ralstonia solanacearum IPO1609], ... gi\|207723531, gi... - gi\|207723531\|ref\|YP_002253930.1\| hypothetical protein RSMK00814 [Ralstonia solanacearum MolK2], gi\|2... gi\|83748618, gi\|... - gi\|83748618\|ref\|ZP_00945637.1\| signal peptide [Ralstonia solanacearum UW551], gi\|83724742\|gb\|EAP7190...	354.0	[0..1]	[272..1]
gi\|113526352, gi... - gi\|113867576\|ref\|YP_726065.1\| hypothetical protein H16_A1565 [Ralstonia eutropha H16], gi\|113526352\|...	349.0	[0..1]	[270..1]
gi\|109451848, gi... - gi\|109451848\|emb\|CAK54795.1\| C22orf25 [synthetic construct], gi\|109451270\|emb\|CAK54496.1\| C22orf25 [... HGNC:25439\|Ensem... - 22 open reading frame 25 C22orf25 - chromosome 22 open reading frame 25	339.0	[0..1]	[248..1]
gi\|39982662, gi\|... - gi\|39995898\|ref\|NP_951849.1\| hypothetical protein GSU0792 [Geobacter sulfurreducens PCA], gi\|3998266...	337.0	[0..1]	[260..1]
gi\|73995915 - gi\|73995915\|ref\|XP_850154.1\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Canis fa...	336.0	[0..1]	[248..1]
gi\|74219739, gi\|... - gi\|74227275\|dbj\|BAE21736.1\| unnamed protein product [Mus musculus], gi\|74219739\|dbj\|BAE40462.1\| unna...	327.0	[0..1]	[248..1]
gi\|149019786, gi... - gi\|62658192\|ref\|XP_341011.2\| PREDICTED: similar to Ser/Thr-rich protein T10 in DGCR region [Rattus n...	323.0	[0..1]	[248..1]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLILTAWHA HPAYALVVAA NRDEFYDRPA APLAWWSDAP HVLAGRDLAQ VVGHAGTWMG  60
   61 MTRDGRFAAL TNYRAPSERR PDARSRGELV ANFLAAEDAS IPAYLDQLKA RNGVYNGYNL 120
  121 LTATRDELWW TSNRAEAPR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLAPGVYGLS NALLDTPWFK VRHRVAAFAE ALAADTGRHG NAIDVARYLD LLAETREAPL  60
   61 GALPATGVAP EWEKLLSAAF IRSPRYGTRA STVLRIRHDG CFDVTERRFD AQGQIGETRY 120
  121 LGVLDAVTQA DTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits