YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17428710
Organism:	Ralstonia solanacearum
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17428710.

Description	E-value	Query Range	Subject Range
TIPL_BPN15 - Tail tip protein L OS=Enterobacteria phage N15 GN=gene 18 PE=3 SV=1	392.0	[0..1]	[233..1]
gi\|9634136, gi\|6... - gi\|9634136\|ref\|NP_037678.1\| gp18 [Enterobacteria phage HK022], gi\|6863128\|gb\|AAF30369.1\|AF069308_17 ...	391.0	[0..1]	[233..1]
gi\|149292365, gi... - gi\|149365952\|ref\|ZP_01887987.1\| putative phage protein [Yersinia pestis CA88-4125], gi\|149292365\|gb\|... gi\|167401467, gi... - gi\|167401467\|ref\|ZP_02306964.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. UG05... gi\|145210000, gi... - gi\|145598304\|ref\|YP_001162380.1\| hypothetical protein YPDSF_1007 [Yersinia pestis Pestoides F], gi\|1... gi\|166211207, gi... - gi\|166211207\|ref\|ZP_02237242.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. B420... gi\|167426599, gi... - gi\|167426599\|ref\|ZP_02318352.1\| phage minor tail protein L [Yersinia pestis biovar Mediaevalis str. ... gi\|166961990, gi... - gi\|167420295\|ref\|ZP_02312048.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. M... gi\|167466947 - gi\|167466947\|ref\|ZP_02331651.1\| phage minor tail protein L [Yersinia pestis FV-1] gi\|22126082, gi\|... - gi\|22126082\|ref\|NP_669505.1\| phage tail protein [Yersinia pestis KIM], gi\|21959038\|gb\|AAM85756.1\|AE0... gi\|25301991 - pir\|\|AI0258 probable phage protein YPO2122 [imported] - Yersinia pestis (strain CO92) gi\|115347836, gi... - gi\|218929225\|ref\|YP_002347100.1\| hypothetical protein YPO2122 [Yersinia pestis CO92], gi\|16122357\|re... gi\|165939397, gi... - gi\|89104371\|ref\|ZP_01176916.1\| COG4672: Phage-related protein [Yersinia pestis biovar Orientalis str... gi\|108807479, gi... - gi\|108807479\|ref\|YP_651395.1\| hypothetical protein YPA_1483 [Yersinia pestis Antiqua], gi\|108779392\|... gi\|165991678, gi... - gi\|166009123\|ref\|ZP_02230021.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. E197... gi\|108775404, gi... - gi\|229902047\|ref\|ZP_04517168.1\| putative phage protein [Yersinia pestis Nepal516], gi\|229680943\|gb\|E... gi\|165920329, gi... - gi\|165927715\|ref\|ZP_02223547.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. F... gi\|77634475, gi\|... - gi\|77634475\|ref\|ZP_00796575.1\| COG4672: Phage-related protein [Yersinia pestis Angola], gi\|162421326... gi\|229897541, gi... - gi\|229897541\|ref\|ZP_04512697.1\| putative phage protein [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229898186, gi... - gi\|229898186\|ref\|ZP_04513334.1\| putative phage protein [Yersinia pestis biovar Orientalis str. India...	384.0	[0..1]	[232..1]
gi\|116054367, gi... - gi\|32043831\|ref\|ZP_00141093.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|107099608 - gi\|107099608\|ref\|ZP_01363526.1\| hypothetical protein PaerPA_01000622 [Pseudomonas aeruginosa PACS2] gi\|254243715, gi... - gi\|84324135\|ref\|ZP_00972199.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa 2192], gi\|2542...	384.0	[0..1]	[232..1]
gi\|11351086 - pir\|\|G83565 probable bacteriophage protein PA0638 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9946514, gi\|1... - gi\|9946514\|gb\|AAG04027.1\|AE004499_6 probable bacteriophage protein [Pseudomonas aeruginosa PAO1], gi...	383.0	[0..1]	[232..1]
gi\|84318837, gi\|... - gi\|84318837\|ref\|ZP_00967254.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa C3719], gi\|254...	383.0	[0..1]	[232..1]
gi\|83716138, gi\|... - gi\|83716138\|ref\|YP_439256.1\| phage minor tail protein L [Burkholderia thailandensis E264], gi\|836499...	381.0	[0..1]	[226..1]
gi\|94413356, gi\|... - gi\|94413356\|ref\|ZP_01293242.1\| hypothetical protein PaerP_01004868 [Pseudomonas aeruginosa PA7], gi\|...	381.0	[0..1]	[232..1]
gi\|38505399, gi\|... - gi\|38707907\|ref\|NP_945047.1\| gp17 [Burkholderia phage phi1026b], gi\|38505399\|gb\|AAR23168.1\| gp17 [Ba... gi\|76581190, gi\|... - gi\|76811737\|ref\|YP_333094.1\| phage minor tail protein L [Burkholderia pseudomallei 1710b], gi\|765811... gi\|161369773, gi... - gi\|90294227\|ref\|ZP_01213822.1\| hypothetical protein Bpse17_02001014 [Burkholderia pseudomallei 1710a...	381.0	[0..1]	[226..1]
gi\|49081936 - gi\|49081936\|gb\|AAT50368.1\| PA0638 [synthetic construct]	380.0	[0..1]	[232..1]

Back

Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITADIQRL EPGALVELFE LDATGVGGDV LRFHGYAQVG SIWWKGSEYS PWPIEATGFA  60
   61 RTGQGQQPAP RLAVGNVDGA ISALCLYTDD LVGAKVRRRR TLGRFLDARN FPEGNPEADP 120
  121 TEELPMEEWF IEQKTAETNE TVEFELSSAL DFNGVQLPRR QIVANVCGWL TVGGYRGPEC 180
  181 GYTGAAMFDR DDNAVSDPSL DKCGGRLSSC KCRFGANELL PFGGFPAADL IRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits