YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000014222
Organism:	Pan troglodytes
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000014222.

Description	E-value	Query Range	Subject Range
gi\|109127420 - gi\|109127420\|ref\|XP_001095765.1\| PREDICTED: mitochondria-associated protein involved in granulocyte-...	128.0	[0..2]	[125..102]
gi\|109487779 - gi\|109487779\|ref\|XP_001054920.1\| PREDICTED: similar to mitochondria-associated granulocyte macrophag...	123.0	[0..2]	[125..67]
gi\|50979270, gi\|... - gi\|50979270\|ref\|NP_001003391.1\| mitochondria-associated granulocyte macrophage CSF signaling molecul...	116.0	[0..1]	[125..1]
TIM16_MOUSE - Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1	114.0	[0..1]	[125..1]
gi\|4929741 - gi\|4929741\|gb\|AAD34131.1\|AF151894_1 CGI-136 protein [Homo sapiens]	114.0	[0..1]	[125..1]
gi\|37963547, gi\|... - gi\|50872153\|ref\|NP_001002893.1\| magmas-like protein [Bos taurus], gb\|AAR05897.1\| magmas-like protein...	114.0	[0..1]	[125..1]
TIM16_XENTR - Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV...	114.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKYLAQIIV MGVQVVGRAF ARALRQEFAA SRAAADARGR AGHRSAAASN LS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.823909
Match:	PF03656.4
Description:	No description for PF03656.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [53-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSLQEAQQI LNVSKLSPEE VQKNYEHLFK VNDKSVGGSF YLQSKVVRAK ERLDEELKIQ  60
   61 AQEDREKGQM PHT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2ctpA
Description:	Solution structure of J-domain from human DnaJ subfamily B menber 12
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits