YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSPTRT00000004940
Organism:	Pan troglodytes
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSPTRT00000004940.

Description	E-value	Query Range	Subject Range
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	2.0E-47	[1..135]	[1..135]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	2.0E-46	[1..137]	[1..137]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	1.0E-43	[1..137]	[1..137]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	1.0E-43	[6..137]	[126..257]
RT16_BOVIN - 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2	1.0E-42	[1..135]	[1..135]
RT16_MOUSE - 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=1 SV=1	8.0E-42	[1..135]	[1..135]
gi\|73953526 - gi\|73953526\|ref\|XP_852347.1\| PREDICTED: similar to mitochondrial ribosomal protein S16 [Canis famili...	3.0E-40	[1..135]	[192..326]
gi\|89266945, gi\|... - gi\|89266945\|emb\|CAJ81716.1\| mitochondrial ribosomal protein S16 [Xenopus tropicalis], gi\|62858601\|re...	2.0E-36	[1..118]	[1..118]
gi\|115528688, gi... - gi\|189217736\|ref\|NP_001121309.1\| hypothetical protein LOC100158393 [Xenopus laevis], gi\|115528688\|gb...	1.0E-35	[1..131]	[1..131]
gi\|182889322, gi... - gi\|54400562\|ref\|NP_001006030.1\| mitochondrial ribosomal protein S16 [Danio rerio], gi\|53733877\|gb\|AA...	2.0E-34	[1..126]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHLTTLLCK AYRGGHLTIR LALGGCTNRP FYRIVAAHNK CPRDGRFVEQ LGSYDPLPNS  60
   61 HGEKLVALNL DRIRHWIGCG AHLSKPMEKL LGLAGFFPLH PMMITNAERL RRKRAREVLL 120
  121 ASQKTDAEAT DTEATET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits