YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17428171
Organism:	Ralstonia solanacearum
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17428171.

Description	E-value	Query Range	Subject Range
gi\|58582517, gi\|... - gi\|58582517\|ref\|YP_201533.1\| hypothetical protein XOO2894 [Xanthomonas oryzae pv. oryzae KACC10331],... gi\|84368341, gi\|... - gi\|84624401\|ref\|YP_451773.1\| hypothetical protein XOO_2744 [Xanthomonas oryzae pv. oryzae MAFF 31101...	281.0	[0..3]	[232..10]
gi\|78047461, gi\|... - gi\|78047461\|ref\|YP_363636.1\| hypothetical protein XCV1905 [Xanthomonas campestris pv. vesicatoria st...	279.0	[0..3]	[229..8]
gi\|21242603, gi\|... - gi\|21242603\|ref\|NP_642185.1\| hypothetical protein XAC1859 [Xanthomonas axonopodis pv. citri str. 306...	276.0	[0..3]	[229..8]
gi\|254181465, gi... - gi\|99911475\|ref\|ZP_01318335.1\| hypothetical protein Bpse1_03002216 [Burkholderia pseudomallei 1655],... gi\|237811200, gi... - gi\|237811200\|ref\|YP_002895651.1\| mosc domain protein [Burkholderia pseudomallei MSHR346], gi\|2375048...	276.0	[0..2]	[229..1]
gi\|51976518, gi\|... - gi\|52143049\|ref\|YP_083780.1\| hypothetical protein BCZK2189 [Bacillus cereus E33L], gi\|51976518\|gb\|AA...	275.0	[0..8]	[229..6]
gi\|227814750, gi... - gi\|227814750\|ref\|YP_002814759.1\| hypothetical protein BAMEG_2160 [Bacillus anthracis str. CDC 684], ... gi\|49479317, gi\|... - gi\|49479317\|ref\|YP_036559.1\| hypothetical protein BT9727_2232 [Bacillus thuringiensis serovar konkuk... gi\|228832206, gi... - gi\|228927487\|ref\|ZP_04090542.1\| Molybdenum cofactor sulphurase [Bacillus thuringiensis serovar pondi... gi\|49185281, gi\|... - gi\|49185281\|ref\|YP_028533.1\| hypothetical protein BAS2272 [Bacillus anthracis str. Sterne], gi\|49179... gi\|228936944, gi... - gi\|228936944\|ref\|ZP_04099687.1\| Molybdenum cofactor sulphurase [Bacillus thuringiensis serovar andal... gi\|47527732, gi\|... - gi\|47527732\|ref\|YP_019081.1\| hypothetical protein GBAA2440 [Bacillus anthracis str. 'Ames Ancestor']... gi\|228946042, gi... - gi\|228946042\|ref\|ZP_04108380.1\| Molybdenum cofactor sulphurase [Bacillus thuringiensis serovar monte... gi\|229121981, gi... - gi\|229121981\|ref\|ZP_04251199.1\| Molybdenum cofactor sulphurase [Bacillus cereus 95/8201], gi\|2286615... gi\|229267402, gi... - gi\|229602994\|ref\|YP_002866767.1\| hypothetical protein BAA_2498 [Bacillus anthracis str. A0248], gi\|2... gi\|254685017 - gi\|254685017\|ref\|ZP_05148877.1\| hypothetical protein BantC_14330 [Bacillus anthracis str. CNEVA-9066... gi\|254722423 - gi\|254722423\|ref\|ZP_05184211.1\| hypothetical protein BantA1_08149 [Bacillus anthracis str. A1055] gi\|254737465 - gi\|254737465\|ref\|ZP_05195168.1\| hypothetical protein BantWNA_20109 [Bacillus anthracis str. Western ... gi\|254743351 - gi\|254743351\|ref\|ZP_05201036.1\| hypothetical protein BantKB_20492 [Bacillus anthracis str. Kruger B] gi\|254751780 - gi\|254751780\|ref\|ZP_05203817.1\| hypothetical protein BantV_04916 [Bacillus anthracis str. Vollum] gi\|254760298 - gi\|254760298\|ref\|ZP_05212322.1\| hypothetical protein BantA9_18461 [Bacillus anthracis str. Australia... gi\|30262439, gi\|... - gi\|30262439\|ref\|NP_844816.1\| hypothetical protein BA2440 [Bacillus anthracis str. Ames], gi\|30257070... gi\|65319734, gi\|... - gi\|65319734\|ref\|ZP_00392693.1\| COG2258: Uncharacterized protein conserved in bacteria [Bacillus anth... gi\|167632318, gi... - gi\|167632318\|ref\|ZP_02390645.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|165868975, gi... - gi\|165868975\|ref\|ZP_02213635.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|170687066, gi... - gi\|170687066\|ref\|ZP_02878285.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|167510681, gi... - gi\|167641404\|ref\|ZP_02399655.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|172084538, gi... - gi\|177649464\|ref\|ZP_02932466.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|170130442, gi... - gi\|170704641\|ref\|ZP_02895107.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|218903572, gi... - gi\|218903572\|ref\|YP_002451406.1\| hypothetical protein BCAH820_2456 [Bacillus cereus AH820], gi\|21853... gi\|190563426, gi... - gi\|190565399\|ref\|ZP_03018319.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ...	275.0	[0..8]	[229..6]
gi\|37677229, gi\|... - gi\|37677229\|ref\|NP_937625.1\| hypothetical protein VVA1569 [Vibrio vulnificus YJ016], gi\|37201774\|dbj...	274.0	[0..9]	[235..7]
gi\|21112940, gi\|... - gi\|21231287\|ref\|NP_637204.1\| hypothetical protein XCC1839 [Xanthomonas campestris pv. campestris str... gi\|66768661, gi\|... - gi\|66768661\|ref\|YP_243423.1\| hypothetical protein XC_2350 [Xanthomonas campestris pv. campestris str...	274.0	[0..8]	[229..16]
gi\|83678265, gi\|... - gi\|83678265\|ref\|ZP_00939995.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ...	273.0	[0..2]	[229..1]
gi\|254202235, gi... - gi\|83621561\|ref\|ZP_00931969.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|147751462, gi... - gi\|83626416\|ref\|ZP_00936640.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|100917850, gi... - gi\|67638234\|ref\|ZP_00437171.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|243064087, gi... - gi\|243064087\|gb\|EES46273.1\| MOSC domain protein [Burkholderia mallei PRL-20], gi\|166999972\|ref\|ZP_02... gi\|53725918, gi\|... - gi\|53725918\|ref\|YP_103551.1\| MOSC domain-containing protein [Burkholderia mallei ATCC 23344], gi\|524... gi\|67643825, gi\|... - gi\|67643825\|ref\|ZP_00442568.1\| mosc domain protein [Burkholderia mallei GB8 horse 4], gi\|238525265\|g... gi\|126241502, gi... - gi\|67645893\|ref\|ZP_00444166.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|121600777, gi... - gi\|84523314\|ref\|ZP_01010450.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|85065296 - gi\|85065296\|ref\|ZP_01026149.1\| COG2258: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|167917942 - gi\|167917942\|ref\|ZP_02505033.1\| MOSC domain protein [Burkholderia pseudomallei BCC215] gi\|124386319, gi... - gi\|124386319\|ref\|YP_001026860.1\| MOSC domain-containing protein [Burkholderia mallei NCTC 10229], gi... gi\|254175469, gi... - gi\|254175469\|ref\|ZP_04882129.1\| MOSC domain protein [Burkholderia mallei ATCC 10399], gi\|194316215\|r...	273.0	[0..2]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLPAPIRID ALLTGRAVDY TRPGSRSAID KRPVADAVQI GPDGIVGDEQ GDLRVHGGPD  60
   61 KAIHHYPFDH YPAWQTDLGA HPLLARPGAF GENISTRGLT EADLCVGDRL RAGEVVLEVS 120
  121 QLRQPCWKLN DRFAQRDMAR RVQQSGRTGW YYRVLQGGTL RAGDTLAWLE RPWPQWPLAR 180
  181 VLDVLYRNML DTDALGDMLA LPLTPSWRKL VENRLARGEV ESWDKRIEGP AREPSGRAPQ 240
  241 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.69897
Match:	1o65A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.442129199706088	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: