YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17428072
Organism:	Ralstonia solanacearum
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17428072.

Description	E-value	Query Range	Subject Range
gi\|45508872, gi\|... - gi\|75907371\|ref\|YP_321667.1\| glutaredoxin 2 [Anabaena variabilis ATCC 29413], gi\|75701096\|gb\|ABA2077...	114.0	[0..2]	[86..1]
gi\|17135484, gi\|... - gi\|17229156\|ref\|NP_485704.1\| hypothetical protein asl1664 [Nostoc sp. PCC 7120], gi\|17135484\|dbj\|BAB... gi\|25529839 - pir\|\|AB2014 hypothetical protein asl1664 [imported] - Nostoc sp. (strain PCC 7120)	112.0	[0..2]	[86..1]
gi\|83748447, gi\|... - gi\|83748447\|ref\|ZP_00945469.1\| Glutaredoxin [Ralstonia solanacearum UW551], gi\|83724858\|gb\|EAP72014.... gi\|207743594, gi... - gi\|207743594\|ref\|YP_002259986.1\| hypothetical protein RSIPO_01777 [Ralstonia solanacearum IPO1609], ...	108.0	[0..1]	[91..1]
gi\|7470661 - pir\|\|S75571 hypothetical protein ssr1391 - Synechocystis sp. (strain PCC 6803) gi\|1653216, gi\|1... - gi\|1653216\|dbj\|BAA18132.1\| ssr1391 [Synechocystis sp. PCC 6803], gi\|16330724\|ref\|NP_441452.1\| hypoth...	102.0	[0..1]	[86..7]
gi\|186465247, gi... - gi\|23124940\|ref\|ZP_00106897.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Nostoc punctifor...	101.0	[0..2]	[86..1]
gi\|29831280, gi\|... - gi\|29831280\|ref\|NP_825914.1\| redoxin [Streptomyces avermitilis MA-4680], gi\|29608395\|dbj\|BAC72449.1\|...	100.0	[0..4]	[89..22]
gi\|113477571, gi... - gi\|71673596\|ref\|ZP_00671344.1\| hypothetical protein TeryDRAFT_4252 [Trichodesmium erythraeum IMS101]...	99.0	[0..2]	[86..1]
gi\|21221752, gi\|... - gi\|5123666\|emb\|CAB45355.1\| putative redoxin [Streptomyces coelicolor A3(2)], gi\|21221752\|ref\|NP_6275... gi\|7481233 - pir\|\|T36269 probable redoxin - Streptomyces coelicolor	98.0	[0..2]	[87..22]
gi\|86604789 - gi\|86604789\|ref\|YP_473552.1\| glutaredoxin family protein [Cyanobacteria bacterium Yellowstone A-Prim... gi\|86553331, gi\|... - gi\|86604789\|ref\|YP_473552.1\| glutaredoxin family protein [Synechococcus sp. JA-3-3Ab], gi\|86553331\|g...	97.0	[0..3]	[88..5]
gi\|37198586, gi\|... - gi\|37679841\|ref\|NP_934450.1\| thiol-disulfide isomerase and thioredoxin [Vibrio vulnificus YJ016], gi...	96.0	[0..4]	[88..14]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLTLYGRA YCHLCDDMKV ALEPFRRDFP FVLHEVDVDS DPTLEDRFGE LVPVLLTGTP  60
   61 QTPREAAREL CHYFLDGPAV QAWLAAQTPS D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	2fgxA
Description:	Solution NMR Structure of Nitrosomonas Europaea Hypothetical Protein Ne2328: Northeast Structural Genomics Consortium Target NeT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits