YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17545740
Organism:	Ralstonia solanacearum GMI1000
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17545740.

Description	E-value	Query Range	Subject Range
gi\|73540762, gi\|... - gi\|73540762\|ref\|YP_295282.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Ralstonia eu...	165.0	[0..1]	[106..1]
tr\|D8NW15\|D8NW15... - Fe-S cluster assembly and activation factor OS=Ralstonia solanacearum GN=iscA PE=4 SV=1 gi\|206595031, gi... - gi\|207743632\|ref\|YP_002260024.1\| hypothetical protein RSIPO_01815 [Ralstonia solanacearum IPO1609], ... gi\|207725257, gi... - gi\|207725257\|ref\|YP_002255653.1\| hypothetical protein RSMK00197 [Ralstonia solanacearum MolK2], gi\|2... gi\|83748485, gi\|... - gi\|83748485\|ref\|ZP_00945507.1\| HesB protein family [Ralstonia solanacearum UW551], gi\|83724896\|gb\|EA...	165.0	[0..1]	[106..1]
gi\|113867180, gi... - gi\|113867180\|ref\|YP_725669.1\| iron sulfur cluster assembly protein (IscA) [Ralstonia eutropha H16], ...	164.0	[0..1]	[106..1]
gi\|68530175, gi\|... - gi\|94309972\|ref\|YP_583182.1\| iron-sulfur cluster assembly protein IscA [Ralstonia metallidurans CH34...	163.0	[0..1]	[106..8]
gi\|37197683, gi\|... - gi\|37678941\|ref\|NP_933550.1\| hypothetical protein VV0757 [Vibrio vulnificus YJ016], gi\|37197683\|dbj\|...	162.0	[0..2]	[106..3]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	162.0	[0..2]	[106..3]
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	162.0	[0..2]	[106..3]
gi\|27360021, gi\|... - gi\|27363904\|ref\|NP_759432.1\| HesB family protein [Vibrio vulnificus CMCP6], gi\|27360021\|gb\|AAO08959....	161.0	[0..2]	[106..3]
gi\|11279039 - pir\|\|H81089 HesB/YadR/YfhF family protein NMB1381 [imported] - Neisseria meningitidis (strain MC58 s... gi\|15677244, gi\|... - gi\|7226622\|gb\|AAF41749.1\| HesB/YadR/YfhF family protein [Neisseria meningitidis MC58], gi\|15677244\|r...	161.0	[0..1]	[106..21]
gi\|75857374, gi\|... - gi\|75857374\|ref\|ZP_00764990.1\| COG0316: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	160.0	[0..2]	[106..3]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLTEKAAQ HVTRYLARRG KGVGLRVGVK TTGCSGLAYK LEYADEIAAE DNVFESNGVK  60
   61 VIVDPKSLPY IDGTELDYAR EGLNEGFRFN NPNVKDECGC GESFRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.221849
Match:	1s98A
Description:	E.coli IscA crystal structure to 2.3 A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.80248983815833	bayes_pls_golite062009
iron-sulfur cluster binding	1.16909449675237	bayes_pls_golite062009
metal cluster binding	1.16909449675237	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: