YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17428033
Organism:	Ralstonia solanacearum
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17428033.

Description	E-value	Query Range	Subject Range
gi\|83748486, gi\|... - gi\|83748486\|ref\|ZP_00945508.1\| IscU protein [Ralstonia solanacearum UW551], gi\|83724897\|gb\|EAP72053.... gi\|206595032, gi... - gi\|207743633\|ref\|YP_002260025.1\| iron-binding protein [Ralstonia solanacearum IPO1609], gi\|206595032... gi\|207725258, gi... - gi\|207725258\|ref\|YP_002255654.1\| iron-binding protein [Ralstonia solanacearum MolK2], gi\|206590492\|e...	211.0	[0..1]	[133..1]
gi\|72118174, gi\|... - gi\|73540761\|ref\|YP_295281.1\| scaffold protein [Ralstonia eutropha JMP134], gi\|72118174\|gb\|AAZ60437.1...	207.0	[0..1]	[133..1]
gi\|115422597, gi... - gi\|187478011\|ref\|YP_786035.1\| [Fe-S] cluster formation/repair protein [Bordetella avium 197N], gi\|11...	206.0	[0..1]	[133..1]
gi\|77967645, gi\|... - gi\|78066900\|ref\|YP_369669.1\| scaffold protein [Burkholderia sp. 383], gi\|77967645\|gb\|ABB09025.1\| FeS...	206.0	[0..1]	[133..1]
gi\|68530174, gi\|... - gi\|94309971\|ref\|YP_583181.1\| scaffold protein [Ralstonia metallidurans CH34], gi\|93353823\|gb\|ABF0791...	206.0	[0..1]	[133..1]
gi\|115282201, gi... - gi\|74017759\|ref\|ZP_00688382.1\| FeS cluster assembly scaffold IscU [Burkholderia ambifaria AMMD], gi\|... gi\|118699455, gi... - gi\|172061080\|ref\|YP_001808732.1\| scaffold protein [Burkholderia ambifaria MC40-6], gi\|171993597\|gb\|A...	206.0	[0..1]	[133..1]
gi\|108464265, gi... - gi\|108760385\|ref\|YP_633158.1\| scaffold protein [Myxococcus xanthus DK 1622], gi\|108464265\|gb\|ABF8945...	205.0	[0..1]	[133..1]
gi\|33573345 - gi\|33573345\|emb\|CAE37329.1\| [Fe-S] cluster formation/repair protein [Bordetella parapertussis] gi\|33596644 - gi\|33596644\|ref\|NP_884287.1\| scaffold protein [Bordetella parapertussis 12822] gi\|33575695, gi\|... - gi\|33601260\|ref\|NP_888820.1\| scaffold protein [Bordetella bronchiseptica RB50], gi\|33575695\|emb\|CAE3... gi\|33572510, gi\|... - gi\|33592862\|ref\|NP_880506.1\| scaffold protein [Bordetella pertussis Tohama I], gi\|33572510\|emb\|CAE42...	205.0	[0..1]	[132..1]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	204.0	[0..1]	[128..1]
gi\|91087363 - gi\|91087363\|ref\|XP_975631.1\| PREDICTED: similar to CG9836 CG9836-PA [Tribolium castaneum]	204.0	[0..2]	[131..22]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSSKVLDH YENPRNVGAF EKGDDTVGTG MVGAPACGDV MKLQIKVNEQ GVIEDAKFKT  60
   61 YGCGSAIASS SLVTEWVKGK TLDQALEIRN TQIAEELALP PVKIHCSILA EDAIKAAVAD 120
  121 YKEKHGTAEQ KAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: