YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17427949
Organism:	Ralstonia solanacearum
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17427949.

Description	E-value	Query Range	Subject Range
gi\|68529910, gi\|... - gi\|94309697\|ref\|YP_582907.1\| NUDIX hydrolase [Ralstonia metallidurans CH34], gi\|93353549\|gb\|ABF07638...	174.0	[0..2]	[202..44]
gi\|206595111, gi... - gi\|207743712\|ref\|YP_002260104.1\| nucleoside diphosphate hydrolase; protein [Ralstonia solanacearum I... gi\|83727488, gi\|... - gi\|83745798\|ref\|ZP_00942855.1\| Conserved hypothetical protein [Ralstonia solanacearum UW551], gi\|837...	170.0	[0..2]	[202..27]
gi\|73542221, gi\|... - gi\|73542221\|ref\|YP_296741.1\| NUDIX hydrolase [Ralstonia eutropha JMP134], gi\|72119634\|gb\|AAZ61897.1\|...	162.0	[0..2]	[202..26]
gi\|113525699, gi... - gi\|113866923\|ref\|YP_725412.1\| NTP pyrophosphohydrolase (oxidative damage repair enzyme) [Ralstonia e...	160.0	[0..6]	[202..30]
gi\|45915852, gi\|... - gi\|69276884\|ref\|ZP_00612356.1\| NUDIX hydrolase [Mesorhizobium sp. BNC1], gi\|68191783\|gb\|EAN06438.1\| ...	155.0	[0..3]	[202..10]
gi\|46316687, gi\|... - gi\|78065659\|ref\|YP_368428.1\| NUDIX hydrolase [Burkholderia sp. 383], gi\|77966404\|gb\|ABB07784.1\| NUDI...	155.0	[0..3]	[202..29]
gi\|118710951, gi... - gi\|170732384\|ref\|YP_001764331.1\| NUDIX hydrolase [Burkholderia cenocepacia MC0-3], gi\|169815626\|gb\|A... gi\|105892340, gi... - gi\|67659500\|ref\|ZP_00456861.1\| NUDIX hydrolase [Burkholderia cenocepacia AU 1054], gi\|67092879\|gb\|EA... gi\|116689096, gi... - gi\|67665350\|ref\|ZP_00462614.1\| NUDIX hydrolase [Burkholderia cenocepacia HI2424], gi\|67101050\|gb\|EAM...	154.0	[0..3]	[202..29]
gi\|91784783, gi\|... - gi\|91784783\|ref\|YP_559989.1\| hypothetical protein Bxe_A1010 [Burkholderia xenovorans LB400], gi\|9168...	154.0	[0..2]	[202..27]
gi\|84357124 - gi\|84357124\|ref\|ZP_00981952.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	153.0	[0..3]	[202..2]
gi\|134138261, gi... - gi\|67546778\|ref\|ZP_00424688.1\| NUDIX hydrolase [Burkholderia vietnamiensis G4], gi\|67531881\|gb\|EAM28...	153.0	[0..3]	[202..29]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTPAFVRE RLHAPPSWVP EHTDESRLID TSLKLREAAV LVPLVQRSAG LTVLLTQRNA  60
   61 TLSQHAGQIS FPGGGRESSD RDAVDTALRE TVEEVGIGAE HVEVVGRLPD YITGSGFHVS 120
  121 PVVGLLTPGF IARPDPSEVA EVFEVPLAFL MDPANHEVRE LRWDDRVRCF YAMPYRRPGG 180
  181 GRYFIWGATA GMLRNLYHLL AA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.129841789981243	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: