YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_RALSO
Organism:	Ralstonia solanacearum
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_RALSO.

Description	E-value	Query Range	Subject Range
gi\|83746829, gi\|... - gi\|83746829\|ref\|ZP_00943876.1\| LSU ribosomal protein L25P [Ralstonia solanacearum UW551], gi\|8372641... gi\|206593627, gi... - gi\|207742239\|ref\|YP_002258631.1\| 50s ribosomal protein l25 (general stress protein ctc) [Ralstonia s... gi\|207727835, gi... - gi\|207727835\|ref\|YP_002256229.1\| 50s ribosomal protein l25 [Ralstonia solanacearum MolK2], gi\|206591...	259.0	[0..1]	[206..1]
RL25_CUPMC - 50S ribosomal protein L25 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	257.0	[0..1]	[206..1]
RL25_METFK - 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplY...	248.0	[0..1]	[187..3]
RL25_CUPNH - 50S ribosomal protein L25 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) G...	248.0	[0..1]	[206..1]
RL25_CUPPJ - 50S ribosomal protein L25 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rplY PE=3 SV=...	246.0	[0..1]	[186..1]
gi\|83720637, gi\|... - gi\|83720637\|ref\|YP_441031.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [Burkholderia thai...	244.0	[0..1]	[206..20]
gi\|76578961, gi\|... - gi\|76809508\|ref\|YP_332166.1\| 50S ribosomal protein L25 [Burkholderia pseudomallei 1710b], gi\|7657896...	244.0	[0..1]	[206..20]
RL25_NITEU - 50S ribosomal protein L25 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rplY PE=3 SV=... RL25_NITEU - 50S ribosomal protein L25 OS=Nitrosomonas europaea GN=rplY PE=3 SV=1	242.0	[0..1]	[196..3]
gi\|167909460 - gi\|167909460\|ref\|ZP_02496551.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167901242 - gi\|167901242\|ref\|ZP_02488447.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|254181866, gi... - gi\|254181866\|ref\|ZP_04888463.1\| 50S ribosomal protein L25 [Burkholderia pseudomallei 1655], gi\|19450... gi\|254207026, gi... - gi\|254207026\|ref\|ZP_04913377.1\| 50S ribosomal protein L25 [Burkholderia mallei JHU], gi\|194528558\|re... gi\|194523576, gi... - gi\|254201692\|ref\|ZP_04908056.1\| 50S ribosomal protein L25 [Burkholderia mallei FMH], gi\|194523576\|re... gi\|167917488 - gi\|167917488\|ref\|ZP_02504579.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167822665 - gi\|167822665\|ref\|ZP_02454136.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167814140 - gi\|167814140\|ref\|ZP_02445820.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167892746 - gi\|167892746\|ref\|ZP_02480148.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167844236 - gi\|167844236\|ref\|ZP_02469744.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167001046 - gi\|167001046\|ref\|ZP_02266847.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia m... gi\|162210089 - gi\|162210089\|ref\|YP_332166.2\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia pse... gi\|167737031 - gi\|167737031\|ref\|ZP_02409805.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|167718014 - gi\|167718014\|ref\|ZP_02401250.1\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia p... gi\|161723210 - gi\|161723210\|ref\|YP_107146.2\| 50S ribosomal protein L25/general stress protein Ctc [Burkholderia pse... gi\|237810771, gi... - gi\|237810771\|ref\|YP_002895222.1\| ribosomal protein L25, Ctc-form [Burkholderia pseudomallei MSHR346]... RL25_BURMA - 50S ribosomal protein L25 OS=Burkholderia mallei GN=rplY PE=3 SV=1 RL25_BURM7 - 50S ribosomal protein L25 OS=Burkholderia mallei (strain NCTC 10247) GN=rplY PE=3 SV=1 RL25_BURMS - 50S ribosomal protein L25 OS=Burkholderia mallei (strain SAVP1) GN=rplY PE=3 SV=1 RL25_BURMA - 50S ribosomal protein L25 OS=Burkholderia mallei (strain ATCC 23344) GN=rplY PE=3 SV=1 gi\|194572505, gi... - gi\|254296082\|ref\|ZP_04963539.1\| 50S ribosomal protein L25 [Burkholderia pseudomallei 406e], gi\|19457... gi\|254187800, gi... - gi\|254187800\|ref\|ZP_04894312.1\| 50S ribosomal protein L25 [Burkholderia pseudomallei Pasteur 52237],...	241.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAFERSV QGTGASRRLR NAGKTPAIIY GAGAEPKLIE LDHNALYHAL KKEAFHSSIL  60
   61 DIEVAGKVEK ALLRDFQLHP FKQLVLHVDF QRVSATEKIH VKVPLHFLNQ ETAPGVKLGH 120
  121 GIVNHILNDV EVSCLPADLP EFIEVDLGNL EIGQTLHISD LKLPKGVTIV THGGDENPAV 180
  181 ANISVPAGEV SAAAAESAGE GDKPAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1vsaT
Description:	No description for 1vsaT was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits