YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17427359
Organism:	Ralstonia solanacearum
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17427359.

Description	E-value	Query Range	Subject Range
gi\|47125326 - gi\|47125326\|gb\|AAH70494.1\| FTH1 protein [Homo sapiens]	165.0	[0..3]	[154..62]
gi\|114637918 - gi\|114637918\|ref\|XP_001140124.1\| PREDICTED: similar to Ferritin heavy chain (Ferritin H subunit) (Pr...	163.0	[0..3]	[154..120]
gi\|83404987 - gi\|83404987\|gb\|AAI11079.1\| Fth1 protein [Rattus norvegicus]	161.0	[0..3]	[154..63]
gi\|109078314 - gi\|109078314\|ref\|XP_001088733.1\| PREDICTED: similar to mitochondrial ferritin [Macaca mulatta]	156.0	[0..3]	[154..73]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGDKKVIQY LNAQLKNELT AINQYFLHAR MYGHWGLKRI GAHEYKESIG EMKHADRLIE  60
   61 RILMLDGLPN LQDLGKLLIG QDTKEMLECD LKLEKAAHAT VVEAIAYCEE VKDYVSRTLF 120
  121 VDILDDTEEH IDWLETQLDL IEKVGIQNYL QSQMEPEGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1bcfA
Description:	Bacterioferritin (cytochrome b1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits