YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2853119, gi\|7...
Organism:	Schizosaccharomyces pombe
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2853119, gi|7....

Description	E-value	Query Range	Subject Range
gi\|46125907, gi\|... - gi\|46125907\|ref\|XP_387507.1\| hypothetical protein FG07331.1 [Gibberella zeae PH-1], gi\|42554721\|gb\|E...	309.0	[0..3]	[309..15]
tom40 - mitochondrial TOM complex subunit Tom40 TOM40_SCHPO - Probable mitochondrial import receptor subunit tom40 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	307.0	[0..1]	[309..1]
gi\|44984225 - gi\|44984225\|gb\|AAS53191.1\| AFL183Cp [Ashbya gossypii ATCC 10895] gi\|44984225, gi\|... - gi\|45198338\|ref\|NP_985367.1\| AFL183Cp [Ashbya gossypii ATCC 10895], gi\|44984225\|gb\|AAS53191.1\| AFL18...	295.0	[0..4]	[309..35]
gi\|67540680, gi\|... - gi\|67540680\|ref\|XP_664114.1\| hypothetical protein AN6510.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	293.0	[0..5]	[309..14]
gi\|70984092, gi\|... - gi\|70984092\|ref\|XP_747566.1\| mitochondrial import receptor subunit (tom40) [Aspergillus fumigatus Af... gi\|159122352 - gi\|159122352\|gb\|EDP47473.1\| mitochondrial import receptor subunit (tom40), putative [Aspergillus fum...	288.0	[0..5]	[309..14]
gi\|207342175 - gi\|207342175\|gb\|EDZ70021.1\| YMR203Wp-like protein [Saccharomyces cerevisiae AWRI1631] TOM40_YEAST - Mitochondrial import receptor subunit TOM40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... TOM40 - Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial... gi\|190408429 - gi\|190408429\|gb\|EDV11694.1\| mitochondrial import receptor subunit TOM40 [Saccharomyces cerevisiae RM...	287.0	[0..4]	[309..34]
gi\|114191725, gi... - gi\|115398506\|ref\|XP_001214842.1\| mitochondrial import receptor subunit tom-40 [Aspergillus terreus N...	285.0	[0..5]	[309..14]
gi\|39947862, gi\|... - gi\|39947862\|ref\|XP_363053.1\| hypothetical protein MGG_08637 [Magnaporthe grisea 70-15], gb\|EAA51115....	285.0	[0..5]	[309..12]
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	283.0	[0..27]	[309..288]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIQTLFTS VNQVGEKIDS YKSSLNLINP GTCENLSKEV SKDILLSNYA FTGVRADVTK  60
   61 GFCTSPWFTV SHAFALGSQV LPPYSFSTMF GGEPLFLRGS VDNDGAVQAM LNCTWNSNVL 120
  121 SKVQMQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.783	N/A	N/A	c.51.2	TolB, N-terminal domain
View	Download	0.466	N/A	N/A	d.131.1	DNA clamp
View	Download	0.452	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.434	N/A	N/A	a.64.1	Saposin
View	Download	0.418	N/A	N/A	c.2.1	NAD(P)-binding Rossmann-fold domains

Predicted Domain #2

Region A:
Residues: [128-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNGAVPNMCQ IEHDHKGKDF SFSFKAMNPW YEEKLTGIYI ISLLQSVTPK LSLGVEALWQ  60
   61 KPSSSIGPEE ATLSYMTRYN AADWIATAHL NGSQGDVTAT FWRKLSPKVE AGVECQLSPV 120
  121 GLNHSAALMT GPKPEGLTSV GVKYEFAQSI YRGQVDSKGR VGVYLERRLA PAITLAFSSE 180
  181 LD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.796	N/A	N/A	b.60.1	Lipocalins
View	Download	0.694	N/A	N/A	d.110.4	SNARE-like
View	Download	0.661	N/A	N/A	b.60.1	Lipocalins
View	Download	0.623	N/A	N/A	b.60.1	Lipocalins
View	Download	0.615	N/A	N/A	b.60.1	Lipocalins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits