YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|240255663, gi...
Organism:	Arabidopsis thaliana
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|240255663, gi....

Description	E-value	Query Range	Subject Range
gi\|6735315, gi\|1... - gi\|6735315\|emb\|CAB68142.1\| hypothetical protein [Arabidopsis thaliana], gi\|15230281\|ref\|NP_191295.1\|...	239.0	[0..1]	[254..1]
gi\|73965031 - gi\|73965031\|ref\|XP_540434.2\| PREDICTED: similar to tRNA splicing endonuclease 54 homolog (SEN54, S. ...	223.0	[0..4]	[220..232]
gi\|26354132 - gi\|26354132\|dbj\|BAC40696.1\| unnamed protein product [Mus musculus]	215.0	[0..4]	[226..38]
gi\|109489395, gi... - ref\|XP_340938.1\| similar to CG5626-PA [Rattus norvegicus], gi\|157818699\|ref\|NP_001103046.1\| tRNA spl...	214.0	[0..4]	[226..41]
gi\|50745473 - gi\|50745473\|ref\|XP_420129.1\| PREDICTED: hypothetical protein XP_420129 [Gallus gallus]	212.0	[0..3]	[223..365]
gi\|114670475 - gi\|114670475\|ref\|XP_001143116.1\| PREDICTED: tRNA splicing endonuclease 54 homolog isoform 3 [Pan tro...	209.0	[0..4]	[220..41]
gi\|215706480, gi... - gi\|222641873\|gb\|EEE70005.1\| hypothetical protein OsJ_29924 [Oryza sativa Japonica Group], gi\|2157064...	208.0	[0..31]	[253..48]
gi\|114195627, gi... - gi\|115388075\|ref\|XP_001211543.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	206.0	[0..3]	[250..51]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKDWEASS SSENEGGFPN DDDEEFHSGG SVPKLQFRVG SSKARWITEL GMAEVEVKRG  60
   61 KLWTTTGIIR SGKTYCFIEE ALYLSEIGEL QILGNEDDIV IPLKDLYEKI AEEKSGCSWE 120
  121 NYEVYRYLKG LGYILGRHGV SWTLKDAARP NGEEESACAG ECPADNDTVT KLLGDMQICD 180
  181 AKAVFDVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1a79A
Description:	tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [189-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPNSRFKKSS PGEPSFVACF SGDSPPSKED IKVLQKRIAA PLTFCHIAQG RASFFSFSSI  60
   61 DLPVLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits