YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45861652, gi\|...
Organism:	Arabidopsis thaliana
Length:	1396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45861652, gi|....

Description	E-value	Query Range	Subject Range
NCKP1_ARATH - Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2	1811.0	[0..1]	[1396..1]
gi\|85719359 - gi\|85719359\|gb\|ABC75364.1\| hypothetical protein MtrDRAFT_AC147481g14v1 [Medicago truncatula]	1638.0	[0..1]	[1393..1]
NCKP1_ORYSA - Probable protein NAP1 (Nck-associated protein 1) (P125Nap1) (NAP of plants) - Oryza sativa (Rice) NCKP1_ORYSJ - Probable protein NAP1 OS=Oryza sativa subsp. japonica GN=NAP1 PE=2 SV=1	1574.0	[0..15]	[1393..1]
gi\|114582221 - gi\|114582221\|ref\|XP_001148485.1\| PREDICTED: NCK-associated protein 1 [Pan troglodytes]	1525.0	[0..66]	[1270..269]
gi\|109100376 - gi\|109100376\|ref\|XP_001099879.1\| PREDICTED: similar to NCK-associated protein 1 isoform 2 [Macaca mu...	1517.0	[0..66]	[1270..209]
gi\|109470163 - gi\|109470163\|ref\|XP_001067975.1\| PREDICTED: similar to Nck-associated protein 1 (NAP 1) (p125Nap1) (...	1513.0	[0..66]	[1270..232]
gi\|40788295 - gi\|40788295\|dbj\|BAA25513.2\| KIAA0587 protein [Homo sapiens]	1507.0	[0..66]	[1270..52]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSRQYYPS QDESMSPTSV RSREWEGPSR WTEYLGPEMA ASVSSTRSSK QIDGHVGGST  60
   61 KALNIQWVVQ MIEVADGLMA KMYRLNQILE YPDPVGHVFS EAFWKAGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPNHPRICTL LSKKFPEHFS KLQLERIDKF SLDSLHDGAE LHLQSLEPWI QLLLDLMAFR  60
   61 EQALRLILDL SSTVITLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [187-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHQNSLILHA FMDLFCAFVR VNLFAEKIPR KMLLQVYNLL HALSRNDRDC DFYHRLVQFI  60
   61 DSYDPPLKGL QEDLNFVSPR IGEVLEAVGP SIFLSADTRK LRNEGFLSPY HPRFPDILTN 120
  121 SAHPMRAQDL ANVTSYREWV LLGYLVCPDE LLRVTSIDIA LVVLKENLVV TLFRDEYILL 180
  181 HEDYQLYVLP RVLESKKMAK SGRTKQKEAD LEYSVAKQVE KMISEVHEQA LQLC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [421-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTIHRERRIL LKQEIGRMVL FFTDQPSLLA PNIQMVFSAL ALAQSEVLWY FQHAGIASSR  60
   61 SKAARVIPVD IDPNDPTIGF LLDGMDRLCC LVRKYISAAR GYALSYLSSS AGRIRYLMGT 120
  121 PGIV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [545-762]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALDLDPTLKG LFQRIVQHLE SIPKAQGENV SAITCDLSDF RKDWLSILMI VTSSRSSINI  60
   61 RHLEKATVST GKEGLLSEGN AAYNWSRCVD ELESQLSKHG SLKKLYFYHQ HLTTVFRNTM 120
  121 FGPEGRPQHC CAWLSVASSF PECASLIIPE EVTKFGRDAV LYVESLIESI MGGLEGLINI 180
  181 LDSEGGFGAL ESQLLPEQAA AYLNNASRIS APSVKSPR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [763-827]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVGGFTLPGH ESYPENNKSI KMLEAAIQRL TNLCSILNDM EPICVINHVF VLREYMRECI  60
   61 LGNFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [828-940]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRFLTALQTD NDLQRPSVLE SLIRRHMGIV HLAEQHVSMD LTQGIREILL TEAFSGPVSS  60
   61 LHTFEKPAEQ QQTTGSAVEV VCNWYMDNII KDVSGAGILF APRHKYFKST RPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [941-1050]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYFAESVTD LKELQAFVRI FGGYGVDRLD RMMKVHTAAL VNCIETSLRS NRELIEAAAA  60
   61 SMHSGDRVER DASVRQIVDL DTVIGFCIEA GQALAFDDLL AEASGAVLED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1051-1279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NASLIHSMIS GIVEHIPEEI PEKKEIRRIK GVANGVGVAG DHDSEWVRLI LEEVGGANDN  60
   61 SWSLLPYFFA SFMTSNAWNT TGFNIETGGF SNNIHCLARC ISAVIAGSEY VRLQREYQQQ 120
  121 HQSLSNGHHS SENLDSEFPP RVTAEASIKS SMLLFVKFAA SIVLDSWSEA NRSHLVAKLI 180
  181 FLDQLCEISP YLPRSSLESH VPYTILRSIY TQYYSNTPST PLSTASPYH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10

Region A:
Residues: [1280-1396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSVSLIHAS PSMKNSTTPQ RGSGSGSSST AAPDSGYFKG SSSSLYGQEH YTESETGNSR  60
   61 NNENNNNNKQ RGSSRRSGPL DYSSSHKGGS GSNSTGPSPL PRFAVSRSGP ISYKQHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits