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View Structure Prediction Details

Protein: GIF1_ARATH
Organism: Arabidopsis thaliana
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIF1_ARATH.

Description E-value Query
Range
Subject
Range
gi|73992677 - gi|73992677|ref|XP_543083.2| PREDICTED: similar to synovial sarcoma translocation gene on chromosome...
125.0 [0..28] [170..190]

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Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR  60
   61 NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ QQQATQQQQM TQQSLMAARS 120
  121 SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE 180
  181 MGSGGGGEGR GGSSGDGGET LYLKSSDDGN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle