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View Structure Prediction Details

Protein: gi|115464181, gi...
Organism: Oryza sativa Japonica Group
Length: 644 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115464181, gi....

Description E-value Query
Range
Subject
Range
gi|51971060 - gi|51971060|dbj|BAD44222.1| arginine-tRNA-protein transferase 1 homolog [Arabidopsis thaliana]
519.0 [0..12] [644..7]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGASSSGA ASASGPGGGG GGESVVIDYG RRRTACGYCR STGQTSISHG LWANSLRADD  60
   61 YQALLDRGWR RSGCFLYKPE MERTCCPQYT IRLKANDFIC SKEQGRVLKK MQRFLDGE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.60206
Match: PF04376.4
Description: No description for PF04376.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.246 0.607 acyltransferase activity a.29.2 Bromodomain

Predicted Domain #2
Region A:
Residues: [119-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPQVGSPQN KTSPTKHSLA EPMNMPVSKI SKTLTNDFQA AKCPNLFEED EFISCLSSKI  60
   61 NEAVGMSFQV GTLGSDVQL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [198-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKAVVKTVKP QLKKKVGGAS QDKKVGEAVQ DLLYTCNISF QIVAEIRRAL PKEKDANHNK  60
   61 VVADISPNSI AEKLAMTMEC HGDIAGLAVK ACNGHLNFYS VTNQTKQNKT SIIVSTHAPD 120
  121 KSSSSKQSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [327-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKNTVRVPQ KRRKLEIKMR RSHFDPEEFA LYQRYQTKVH KEKKVSESSY KRFLVDTPIV  60
   61 FVPPRSGDNT VPPCGFGSFH QQYRIDGKLV AVGVVDILPK CLSSKYLFWD PDFAFLSLGK 120
  121 YTALKEIDWV KTTQEHCPNL QYYYLGYYIH SCNKMRYKAA YRPSELLCPV RFEWVC

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 90.39794
Match: PF04377.6
Description: No description for PF04377.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [503-644]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDSAKRLLDK SLYSVLSDFA QIQDEMPQPQ NSHLDTELSK NDNCESPIDE DDEDLSYDDS  60
   61 DMMVDEEMVR SESNTDVMED CSSIIDFENV MMDLNGSRVK YKDLLGVVGR IERRHLEQLE 120
  121 RQLSKYVKVV GKELSDRMVY SL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle