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View Structure Prediction Details

Protein: gi|215701461, gi...
Organism: Oryza sativa Japonica Group
Length: 569 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215701461, gi....

Description E-value Query
Range
Subject
Range
ROGF8_ARATH - Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1
723.0 [0..78] [569..49]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPLLKIGH GLDRFRWRRS TSSSSSSPLA LSLSSSSAAA LSDDDPGSPM DPEMPPAARR  60
   61 ALSRSSGSRG RLSFELPPLA GGPSDKEEAP PR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSAPAPARP APAALHEGPP SDAEMVREKF SKLLLGEDMS GTGKGVSSAL ALSNAITNLA  60
   61 ASVFGEQRRL QPMAADQKAR WRREIDWLLS VSDHIVEFVP SKQVSEDGST MEIMITQQRR 120
  121 DLQMNIPALR KLDAMLLEYL DNFKDKQEFW YVSKDASESE KGNTPRQDDR WWLPTVRVPP 180
  181 GGLSDASRKW VQHQKDLVNQ VLKAAMAINA NVLMEMDVPE AYIESLPKNG KSTLGDSMYK 240
  241 IITEDHFNPE ELLGTVDMSA EYNIIDLKNR IEASVVIWQR KMVHKEGKLS WGHGVKFEKR 300
  301 EKFEARAENV LLLIKHRFPG IAQSALDISK IQYNRDIGLA ILESYSRTLE SLAFTVMSRI 360
  361 EDVLHADSLA QASNTR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #3
Region A:
Residues: [469-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQESMRMASL SRYDTDKVVI DAKAEVERLG RMEPVSATLF DFVSPRDQDV VATKMDSKEK  60
   61 GCRGDAHSRK LTKVSPIATK RYSYLEKLEN LSGTRSPISR H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle