YRC Public Data Repository - Protein Structure Prediction

Protein:	VMO1_MOUSE
Organism:	Mus musculus
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMO1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157769389 - gi\|157769389\|ref\|XP_001676515.1\| Hypothetical protein CBG14364 [Caenorhabditis briggsae AF16] gi\|39597845, gi\|... - gi\|39597845\|emb\|CAE68537.1\| Hypothetical protein CBG14364 [Caenorhabditis briggsae], gi\|187027850\|em...	267.0	[0..15]	[200..147]
VMO1 - vitelline membrane outer layer 1 homolog (chicken)	259.0	[0..1]	[201..1]
gi\|109491162, gi... - gi\|62656365\|ref\|XP_340833.2\| PREDICTED: similar to Vitelline membrane outer layer protein 1 homolog ...	259.0	[0..1]	[201..1]
gi\|114665812 - gi\|114665812\|ref\|XP_001161578.1\| PREDICTED: secretory protein LOC284013 [Pan troglodytes]	252.0	[0..1]	[201..1]
CE21354 - status:Partially_confirmed UniProt:Q9N2S5 protein_id:AAF60927.1	247.0	[0..9]	[199..30]
gi\|57086583 - gi\|57086583\|ref\|XP_546575.1\| PREDICTED: similar to Protein UNQ6350/PRO21055 homolog precursor [Canis...	243.0	[0..1]	[201..1]
gi\|109112862 - gi\|109112862\|ref\|XP_001096435.1\| PREDICTED: similar to Vitelline membrane outer layer protein 1 homo...	242.0	[0..1]	[199..1]
gi\|50731105 - gi\|50731105\|ref\|XP_417168.1\| PREDICTED: similar to vitelline membrane outer layer protein I [Gallus ...	221.0	[0..10]	[200..144]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQAGARLL LLLGVMCYGH AQIQVHVEPR YASIVDVTNG GTWGDWAWPE MCPDGYFASG  60
   61 FSVKVEPPQG IPGDDTALNG IRLHCTRGNS QKNTHVVESQ SGSWGSWSEP LWCPGTSFLV 120
  121 AFCLRVEPFT FPGDNTGVNN VRFRCSDGVE LEGPGLNWGD YGEWSNSCPK GVCGLQTKIQ 180
  181 KPRGLRDDTA LNDIRIFCCA S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.221849
Match:	1vmoA
Description:	Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits