YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24111323, gi\|...
Organism:	Arabidopsis thaliana
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111323, gi|....

Description	E-value	Query Range	Subject Range
gi\|7527725 - gi\|7527725\|gb\|AAF63174.1\|AC010657_10 T5E21.12 [Arabidopsis thaliana]	296.0	[0..1]	[233..1]
MRPL46 - mitochondrial ribosomal protein L46	265.0	[0..3]	[222..17]
gi\|114658725 - gi\|114658725\|ref\|XP_510572.2\| PREDICTED: mitochondrial ribosomal protein L46 isoform 2 [Pan troglody...	260.0	[0..3]	[222..17]
RM46_RAT - 39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1	259.0	[0..10]	[222..27]
gi\|109082282 - gi\|109082282\|ref\|XP_001088970.1\| PREDICTED: similar to mitochondrial ribosomal protein L46 isoform 2...	256.0	[0..3]	[222..17]
gi\|73951430 - gi\|73951430\|ref\|XP_536185.2\| PREDICTED: similar to mitochondrial ribosomal protein L46 [Canis famili...	254.0	[0..4]	[222..23]
gi\|92867122 - gi\|92867122\|gb\|ABE77505.1\| hypothetical protein MtrDRAFT_AC152407g10v1 [Medicago truncatula]	253.0	[0..3]	[233..50]
RM46_PONPY - 39S ribosomal protein L46, mitochondrial precursor - Pongo pygmaeus (Orangutan) RM46_PONAB - 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1	251.0	[0..8]	[222..27]
RM46_MOUSE - 39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=1 SV=1	243.0	[0..29]	[222..47]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSSLRLLA KPLLESRRGF CTSSDKIVAS VLFERLRVVI PKPDPAVYAF QEFKFNWQQQ  60
   61 FRRRYPDEFL DIAK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.816	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #2

Region A:
Residues: [75-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRAKGEYQMD YVPAPRITEA DKNNDRKSLY RALDKKLYLL IFGKPFGATS DKPVWHFPEK  60
   61 VYDSEPTLRK CAESALKSVV GDLTHTYFVG NAPMAHMAIQ PTEEMPDLPS YKRFFFKCSV 120
  121 VAASKYDISN CEDFVWVTKD ELLEFFPEQA EFFNKMIIS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.49
Match:	2dukA
Description:	No description for 2dukA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits