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View Structure Prediction Details

Protein: gi|24111297, gi|...
Organism: Arabidopsis thaliana
Length: 519 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111297, gi|....

Description E-value Query
Range
Subject
Range
MSL2_ARATH - Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
287.0 [0..1] [519..155]

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Predicted Domain #1
Region A:
Residues: [1-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYVQPLLL WLGALFICRA LDPVVLPTEA SKIVKDRLLN FVRSLSTVLA FAYCLSSLIQ  60
   61 QTQKLFSETS NPSDTRNMGF QFAGKALYSA VWVAAVSLFM ELLGFSTQKW LTAGGLGTVL 120
  121 ITLAGREILT NFLSSVMIHA TRPFVLNEWI QTKIEGYEVS GTVEHVGWWS PTIIRGEDRE 180
  181 AIHIPNHKFT VNVVRNLTQK THWRIKTHLA ISHLDVNKIN NIVADMRKVL AKNPMVEQQR 240
  241 LHRRVFLENV IPENQALSIL ISCFVKTSHH EEYLGVKEAI LLDLLRVISH HRARLATPIR 300
  301 TIRKMYTETD VENT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.221849
Match: 2oauA
Description: No description for 2oauA was found.

Predicted Domain #2
Region A:
Residues: [315-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFGESMYGGV TSRRPLMLIE PAYKINGEDK SKSQNRAAKP TAEQENKGSN PKSKETSSPD  60
   61 LKANVKVGES PVSDTNKVPE ETVAKPVIKA VSKPPTPKDT ETSGTEKPKA KRSGGTIKST 120
  121 KTDETDSSTS SASRSTLEEN IVLGVALEGS KRTLPIEEEI HSPPMETDAK ELTGARRSGG 180
  181 NGPLVADKEQ KDSQSQPNSG ASTEP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.34
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle