YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB9_ARATH
Organism:	Arabidopsis thaliana
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB9_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21553960 - gi\|21553960\|gb\|AAM63041.1\| unknown [Arabidopsis thaliana]	203.0	[0..1]	[117..1]
gi\|14585847 - gi\|14585847\|gb\|AAK67625.1\| hypothetical protein CX157 [Homo sapiens]	171.0	[0..5]	[115..3]
gi\|218198880 - gi\|218198880\|gb\|EEC81307.1\| hypothetical protein OsI_24449 [Oryza sativa Indica Group] gi\|53792931, gi\|... - gi\|53792931\|dbj\|BAD54107.1\| complex 1 family protein-like [Oryza sativa Japonica Group], gi\|22263622...	166.0	[0..5]	[115..3]
gi\|187469746, gi... - gi\|197245756\|gb\|AAI68767.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...	140.0	[0..1]	[97..1]
NDUB9_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3	139.0	[0..1]	[97..1]
gi\|27802989 - gi\|27802989\|emb\|CAD60692.1\| unnamed protein product [Podospora anserina]	138.0	[0..21]	[110..1]
NDUB9_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2	137.0	[0..1]	[97..1]
gi\|49079116, gi\|... - gi\|71023085\|ref\|XP_761772.1\| hypothetical protein UM05625.1 [Ustilago maydis 521], ref\|XP_403240.1\| ...	136.0	[0..2]	[102..13]
gi\|109087441 - gi\|109087441\|ref\|XP_001100168.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	135.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVSTAAYF ARRAAQKERV RILYRRALKD TLNWAVHRHI FYRDASDLRE KFNVNQDVED  60
   61 VDRIDKLIAH GEAEYNKWRH PDPYIVPWAP GGSKFCRNPT PPAGIEIVYN YGLEDNP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.113509
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.876	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits