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View Structure Prediction Details

Protein: AGD8_ARATH
Organism: Arabidopsis thaliana
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGD8_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268541, gi|7... - pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana, gi|7268541|emb|CAB78791.1| putativ...
321.0 [0..1] [413..1]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV  60
   61 HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD GGKIEAKYTS RAADLYRQIL 120
  121 AKEVAKAIAE ETNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.09691
Match: 2p57A
Description: No description for 2p57A was found.

Predicted Domain #2
Region A:
Residues: [135-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLLSSPVATS QLPEVSNGVS SYSVKEELPL SKHEATSATS SPKASNTVVP STFKKPIGAK  60
   61 RTGKTGGLGA RKLTTKPKDN LYEQKPEEVA PVIPAVSSTN NGESKSSAGS SFASRFEYND 120
  121 DLQSGGQSVG GTQVLNHVAP PKSSSFFSDF GMDSSFPKKS SSNSSKSQVE ESDEARKKFT 180
  181 NAKSISSAQY FGDQNKNADL ESKATLQKFA GSASISSADF YGHDQDDSNI DITASDLINR 240
  241 LSFQAQQDLS SLVNIAGETK KKLGTLASGI FSDIQDRML

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle