YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PGL1A_ARATH
Organism: Arabidopsis thaliana
Length: 324 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGL1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|7269136, gi|3... - pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana, gi|7269136|emb|CAB79244.1| putativ...
561.0 [0..1] [324..1]

Back

Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK  60
   61 ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL QALQSFYYDG KAIMSNEEFD 120
  121 NLKEELM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.895 N/A N/A a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain
View Download 0.546 N/A N/A a.1.1 Globin-like
View Download 0.504 N/A N/A a.1.1 Globin-like
View Download 0.502 N/A N/A a.1.1 Globin-like
View Download 0.498 N/A N/A a.1.1 Globin-like

Predicted Domain #2
Region A:
Residues: [128-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WEGSSVVMLS SDEQRFLEAS MAYVSGNPIL NDEEYDKLKL KLKIDGSDIV SEGPRCSLRS  60
   61 KKVYSDLAVD YFKMLLLNVP ATVVALGLFF FLDDITGFEI TYIMELPEPY SFIFTWFAAV 120
  121 PVIVYLALSI TKLIIKDFLI LKGPCPNCGT ENTSFFGTIL SISSGGKTNT VKCTNCGTAM 180
  181 VYDSGSRLIT LPEGSQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle