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View Structure Prediction Details

Protein: Y2446_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2446_ARATH.

Description E-value Query
Range
Subject
Range
gi|20093250, gi|... - gi|20093250|ref|NP_619325.1| dTDP-glucose 4,6-dehydratase [Methanosarcina acetivorans C2A], gi|19918...
201.0 [0..47] [279..1]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLLLRHS SAVFFSQSSF FTKNKSFRSF TSIKMEKGEA ENAVKTKKVF VAGATGQTGK  60
   61 RIVEQLLSRG FAVKAGVRDV EKAKTSFKDD PSLQIVRADV TEGPDKLAEV IGDDSQAVIC 120
  121 ATGFRPGFDI FTPWKVDNFG TVNLVDACRK QGVEKFVLVS SILVNGAAMG QILNPAYLFL 180
  181 NLFGLTLVAK LQAEKYIKKS GINYTIVRPG GLKNDPPTGN VVMEPEDTLY EGSISRDLVA 240
  241 EVAVEALLQE ESSFKVVEIV ARAEAPKRSY KDLFASVKGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.09691
Match: 1bxkA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.03099072397093 bayes_pls_golite062009
oxidoreductase activity 0.442294542097958 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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