YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83002417, gi\|...
Organism:	Mus musculus
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83002417, gi|....

Description	E-value	Query Range	Subject Range
gi\|109514146, gi... - gi\|62667517\|ref\|XP_577054.1\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|109514146\|ref\|X...	222.0	[0..1]	[161..1]
gi\|83001338, gi\|... - gi\|94408804\|ref\|XP_993891.1\| PREDICTED: hypothetical protein LOC67048 isoform 3 [Mus musculus], gi\|8...	153.0	[0..42]	[161..1]
gi\|187025122, gi... - gi\|39591627\|emb\|CAE71204.1\| Hypothetical protein CBG18066 [Caenorhabditis briggsae], gi\|187025122\|em... gi\|157775287 - gi\|157775287\|ref\|XP_001665709.1\| hypothetical protein CBG18066 [Caenorhabditis briggsae AF16]	140.0	[0..59]	[161..81]
CE00672 - status:Confirmed UniProt:Q21821 protein_id:CAA83617.1	138.0	[0..59]	[161..84]
gi\|76658818 - gi\|76658818\|ref\|XP_869782.1\| PREDICTED: hypothetical protein XP_864689 [Bos taurus]	131.0	[0..7]	[161..92]
gi\|74009101 - gi\|74009101\|ref\|XP_538195.2\| PREDICTED: hypothetical protein XP_538195 [Canis familiaris]	124.0	[0..42]	[161..1]
VMA21_DANRE - Vacuolar ATPase assembly integral membrane protein vma21 OS=Danio rerio GN=vma21 PE=3 SV=1	118.0	[0..64]	[161..7]
gi\|42547742, gi\|... - gi\|46108788\|ref\|XP_381452.1\| hypothetical protein FG01276.1 [Gibberella zeae PH-1], gi\|42547742\|gb\|E...	110.0	[0..74]	[161..22]
VMA21_NEUCR - Vacuolar ATPase assembly integral membrane protein VMA21 OS=Neurospora crassa GN=vma-21 PE=3 SV=1 VMA21_NEUCR - Vacuolar ATPase assembly integral membrane protein vma-21 OS=Neurospora crassa (strain ATCC 24698 / ...	108.0	[0..61]	[158..13]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQPTAGSS FPRLLYLGSP GSRDTASGTE RRTTGTGPGR TMLRGKSRLN VEWLGYSPGL  60
   61 LLENDPLAAG RTPRTPRGNE NSLAATLKTL LFFTALMITV PIGLYFTTKA YIFEGALGMS 120
  121 NRDSYFYAAI VAVVAVHVVL ALFVYVAWNE GSRQWREGKQ D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits