YRC Public Data Repository - Protein Structure Prediction

Protein:	PLSP1_ARATH
Organism:	Arabidopsis thaliana
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLSP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|25082936 - gi\|25082936\|gb\|AAN72018.1\| chloroplast thylakoidal processing peptidase, putative [Arabidopsis thali...	311.0	[0..1]	[291..1]
gi\|186684006, gi... - gi\|23125131\|ref\|ZP_00107078.1\| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi\|186684...	229.0	[0..98]	[280..8]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	229.0	[0..98]	[280..8]
gi\|75700879, gi\|... - gi\|75907154\|ref\|YP_321450.1\| thylakoidal processing peptidase [Anabaena variabilis ATCC 29413], gi\|7...	229.0	[0..98]	[280..8]
gi\|22294126, gi\|... - gi\|22297948\|ref\|NP_681195.1\| signal peptidase I [Thermosynechococcus elongatus BP-1], gi\|22294126\|db...	217.0	[0..104]	[285..8]
gi\|46119817, gi\|... - gi\|67922441\|ref\|ZP_00515951.1\| Signal peptidase I [Crocosphaera watsonii WH 8501], gi\|67855700\|gb\|EA...	217.0	[0..91]	[282..4]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVMISLHFS TPPLAFLKSD SNSRFLKNPN PNFIQFTPKS QLLFPQRLNF NTGTNLNRRT  60
   61 LSCYGIKDSS ETTKSAPSLD SGDGGGGDGG DDDKGEVEEK NRLFP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.257	a.4.3	ARID-like
View	Download	0.257	a.4.3	ARID-like
View	Download	0.216	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.209	b.61.5	Dipeptidyl peptidase I (cathepsin C), exclusion domain
View	Download	0.208	d.170.2	A heparin-binding domain

Predicted Domain #2

Region A:
Residues: [106-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EWLDFTSDDA QTVFVAIAVS LAFRYFIAEP RYIPSLSMYP TFDVGDRLVA EKVSYYFRKP  60
   61 CANDIVIFKS PPVLQEVGYT DADVFIKRIV AKEGDLVEVH NGKLMVNGVA R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [217-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEKFILEPPG YEMTPIRVPE NSVFVMGDNR NNSYDSHVWG PLPLKNIIGR SVFRYWPPNR  60
   61 VSGTVLEGGC AVDKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.23
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits