YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5I_PIG
Organism:	Sus scrofa
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5I_PIG.

Description	E-value	Query Range	Subject Range
gi\|47223717 - gi\|47223717\|emb\|CAF99326.1\| unnamed protein product [Tetraodon nigroviridis]	92.0	[0..1]	[71..1]
gi\|68359567 - gi\|68359567\|ref\|XP_696636.1\| PREDICTED: similar to potassium channel, subfamily V, member 2 [Danio r...	91.0	[0..1]	[71..549]
ATP5I_PONPY - ATP synthase e chain, mitochondrial - Pongo pygmaeus (Orangutan) ATP5I_PONAB - ATP synthase subunit e, mitochondrial OS=Pongo abelii GN=ATP5I PE=3 SV=3	87.0	[0..1]	[71..1]
ATP5I_BOVIN - ATP synthase subunit e, mitochondrial OS=Bos taurus GN=ATP5I PE=1 SV=2	86.0	[0..1]	[71..1]
gi\|95102788, gi\|... - gi\|95102788\|gb\|ABF51335.1\| H+ transporting ATP synthase subunit e [Bombyx mori], gi\|148298748\|ref\|NP...	86.0	[0..4]	[71..9]
gi\|263673 - gi\|263673\|gb\|AAB24947.1\| F1Fo-ATPase subunit e [Mus sp.] ATP5I_MOUSE - ATP synthase subunit e, mitochondrial OS=Mus musculus GN=Atp5i PE=1 SV=2	86.0	[0..1]	[71..1]
gi\|118778802, gi... - gi\|118778802\|ref\|XP_308877.3\| AGAP006879-PA [Anopheles gambiae str. PEST], gi\|116132559\|gb\|EAA04251.... AGAP006879-PA - F-type H+-transporting ATPase subunit e\|protein_coding\|2L:39319873:39320419:1\|gene:AGAP006879	83.0	[0..4]	[70..7]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPVQVSPL IKLGRYSALF LGVAYGAKRY NYLKPRAEEE RRIAAEEKKK QDELKRIERE  60
   61 LAEAQEDSTL K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.29243
Match:	PF05680.3
Description:	No description for PF05680.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.895	N/A	N/A	a.2.2	Ribosomal protein L29 (L29p)

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	1.14783217011852	bayes_pls_golite062009
structural molecule activity	0.94596289152098	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: