YRC Public Data Repository - Protein Structure Prediction

Protein:	GBG12_BOVIN
Organism:	Bos taurus
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBG12_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|73986861 - gi\|73986861\|ref\|XP_853699.1\| PREDICTED: similar to Guanine nucleotide-binding protein G(I)/G(S)/G(O)...	113.0	[0..1]	[72..1]
gi\|61856514 - gi\|61856514\|ref\|XP_607872.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein), g...	113.0	[0..1]	[72..22]
gi\|94385266, gi\|... - gi\|94385266\|ref\|XP_992838.1\| PREDICTED: similar to Guanine nucleotide-binding protein G(I)/G(S)/G(O)...	113.0	[0..1]	[72..1]
gi\|109507914, gi... - gi\|109508592\|ref\|XP_001070714.1\| PREDICTED: similar to Guanine nucleotide-binding protein G(I)/G(S)/...	112.0	[0..1]	[72..1]
gi\|50539862, gi\|... - gi\|50539862\|ref\|NP_001002397.1\| guanine nucleotide binding protein (G protein), gamma 7 [Danio rerio...	111.0	[0..5]	[72..1]
GNG7 - guanine nucleotide binding protein (G protein), gamma 7 gi\|109122851 - gi\|109122851\|ref\|XP_001098800.1\| PREDICTED: similar to guanine nucleotide binding protein (G protein... gi\|114674554 - gi\|114674554\|ref\|XP_001152049.1\| PREDICTED: guanine nucleotide binding protein (G protein), gamma 7 ... gi\|208968219 - gi\|208968219\|dbj\|BAG73948.1\| FLJ00058 [synthetic construct]	111.0	[0..5]	[72..1]
gi\|47229899 - gi\|47229899\|emb\|CAG10313.1\| unnamed protein product [Tetraodon nigroviridis]	111.0	[0..5]	[72..1]
gi\|62858615, gi\|... - gi\|89273841\|emb\|CAJ81829.1\| guanine nucleotide binding protein (G protein), gamma 7 [Xenopus tropica...	110.0	[0..5]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKTASTNN IAQARRTVQQ LRMEASIERI KVSKASADLM SYCEEHARND PLLMGIPTSE  60
   61 NPFKDKKTCT IL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1xhmB
Description:	The Crystal Structure of a Biologically Active Peptide (SIGK) Bound to a G Protein Beta:Gamma Heterodimer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits