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View Structure Prediction Details

Protein: GRF5_ARATH
Organism: Arabidopsis thaliana
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRF5_ARATH.

Description E-value Query
Range
Subject
Range
gi|11994367 - gi|11994367|dbj|BAB02326.1| unnamed protein product [Arabidopsis thaliana]
488.0 [0..1] [397..1]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR  60
   61 LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR 120
  121 KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASSSSMDAY SNSNRFGLGG SSSNTRGYFN SHSLDYPYPS TSPKQQQQTL HHASALSLHQ  60
   61 NTNSTSQFNV LASAT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHKDFRYFQG IGERVGGVGE RTFFPEASRS FQDSPYHHHQ QPLATVMNDP YHHCSTDHNK  60
   61 IDHHHTYSSS SSSQHLHHDH DHRQQQCFVL GADMFNKPTR SVLANSSRQD QNQEEDEKDS 120
  121 SESSKKSLHH FFGEDWAQNK NSSDSWLDLS SHSRLDTGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle