YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPX1_ARATH
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592813 - gi|21592813|gb|AAM64762.1| ids4-like protein [Arabidopsis thaliana]
209.0 [0..1] [256..1]

Back

Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGKSLSNQ IEQTLPEWQD KFLSYKELKK RLKLIGSKTA DRPVKRLRLD EFSVGISKEE  60
   61 INFIQLLEDE LEKFNNFFVE KEEEYIIRLK EFRDRIAKAK DSMEKMIKIR KEIVDFHGEM 120
  121 VLLENYSALN YTGLVKILKK YDKRTGDLMR LPFIQKVLQQ PFYTTDLLFK LVKESEAMLD 180
  181 QIFPANETES EIIQAELSEH 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.49485
Match: PF03105.10
Description: No description for PF03105.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [201-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFMESLHMKS TIAALRVLKE IRSGSSTVSV FSLPPLQLNG LDETWKKIPL LEQEAK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle