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View Structure Prediction Details

Protein: gi|23506105, gi|...
Organism: Arabidopsis thaliana
Length: 531 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23506105, gi|....

Description E-value Query
Range
Subject
Range
gi|25453542, gi|... - gi|3860163|gb|AAC72977.1| disease resistance protein RPP1-WsA [Arabidopsis thaliana], pir||T52346 di...
409.0 [0..1] [527..1]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYFFLGTV VVVALAIYTL LGTISFMVYR KFRLHQEKNN ISSCFSFSSC FSFSSSSSTS  60
   61 SPGRKHQVFP SFHGADVRKS FLSHIMKEFK SKGIDIFIDK DIKRGKSIGP ELTEAIRGSR 120
  121 VAIVFLSRKY ASSSWCLNEL ALIMKCRKEL GLTVMTLFYD LDPTDVRKQT GDFGMAFKET 180
  181 CKGKTKDEIG RWRHALEEVA KIAGYHSSIW DNEADMIGIV TTDISNTLNI STPSSDF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.1
Match: 2j67A
Description: No description for 2j67A was found.

Predicted Domain #2
Region A:
Residues: [238-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLVGMEDHM KKLERMLYLD LNDVRMIGIW GPPGIGKTSI ARVLFRKHSD SFDLSVFMET  60
   61 VKGYTRPGCS DEHGLKLHLQ QQFLSQIFNQ KDVEVPHLGV VQDRLRDKRV LVVLDDVDQS 120
  121 AQLEAMAKEN KWFGPGSRII ITTQDRRLLK AHGIKDVYKV DLPPPDDAFQ IFCMYAFGKT 180
  181 SPKHGFEELA WEATYLSGIH PSGIKSMGSY FRKMSKPEWV NALQRLRTSK LDSESPRTHR 240
  241 KLINRLRNVK QKMLSNTLSR IRKHQIASAA AKAASVYETS IKEEVDSSAE SLNH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.154902
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle