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View Structure Prediction Details

Protein: gi|240255969, gi...
Organism: Arabidopsis thaliana
Length: 741 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|240255969, gi....

Description E-value Query
Range
Subject
Range
gi|89257646 - gi|89257646|gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]
1201.0 [0..1] [741..1]
gi|16974605, gi|... - gi|9758786|dbj|BAB09084.1| unnamed protein product [Arabidopsis thaliana], gi|23506171|gb|AAN31097.1...
1129.0 [0..1] [719..4]
gi|92872100 - gi|92872100|gb|ABE80901.1| At5g47580/MNJ7_17 [Medicago truncatula]
1092.0 [0..3] [728..2]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA  60
   61 TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM ANSM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLGYMVTQD LLMNLTALGI LVITDVVNIC IQLGTGAIYV FPQEHALVII LMLLMFMILS  60
   61 FSAITVPATK RFLELKYKKR YEFALKQCPS YTERRRGVPK LKEDLMKFWM MAHTSSPQFV 120
  121 MARSVTCTTT GFLCFLIAIT LAEAMVRSYF LQPRSLGFCN GD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [267-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDYKWSTTLV LVSQTAAVAI GTVAPASRWL KAVNFRCPFR NKKSLKDELR VESYWVECLA  60
   61 EKKERPLNFW MLHGRCSRKL AHDLNRLMLD ICIATQYGIV LASKFLRFIT VYCSSRILLC 120
  121 CFHFTFKSD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [396-630]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVANAESSGS NPSTRQFVLH LEGEEEMVDY MARSNRVATD HLIQKGRKKQ PVNLIELLEA  60
   61 TTFISKGFEG IRDFDSDEVS SLASGEPPNS WALPLVTLTS IAVALPNIKP CSLKKLVKAV 120
  121 NEALVYVNKF EEVLDIEGEL ANSRKAAEVV WLGVDLYHKW LNVDLRKLSK QHSKTPQEVL 180
  181 KELVDIAQKE FTESWEKNRI LCMKHKPSHW PIKTQAANSM YRISQTLLMK YESRN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [631-741]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL  60
   61 EIVDRRCMPA LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle