YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23452030, gi\|...
Organism:	Chlamydomonas reinhardtii
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23452030, gi|....

Description	E-value	Query Range	Subject Range
gi\|90326185, gi\|... - gi\|90412826\|ref\|ZP_01220826.1\| uncharacterized protein conserved in bacteria [Photobacterium profund...	139.0	[0..1]	[85..1]
gi\|86355902, gi\|... - gi\|86355902\|ref\|YP_467794.1\| hypothetical protein RHE_CH00244 [Rhizobium etli CFN 42], gi\|86280004\|g...	138.0	[0..3]	[84..4]
gi\|15073194 - gi\|15073194\|emb\|CAC41702.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964018 - gi\|15964018\|ref\|NP_384371.1\| hypothetical protein SMc00345 [Sinorhizobium meliloti 1021]	137.0	[0..3]	[85..4]
gi\|113871296, gi... - gi\|150398651\|ref\|YP_001329118.1\| putative selenoprotein [Sinorhizobium medicae WSM419], gi\|150030166...	137.0	[0..3]	[85..4]
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	137.0	[0..1]	[84..3]
gi\|89072715, gi\|... - gi\|89072715\|ref\|ZP_01159280.1\| selenoprotein W-related protein [Photobacterium sp. SKA34], gi\|890515...	136.0	[0..1]	[85..1]
gi\|95111902 - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent... gi\|104782915, gi... - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent...	135.0	[0..2]	[84..4]
gi\|17934144, gi\|... - gi\|17934144\|ref\|NP_530934.1\| hypothetical protein Atu0228 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25378705, gi\|... - pir\|\|AD2604 conserved hypothetical protein Atu0228 [imported] - Agrobacterium tumefaciens (strain C5...	135.0	[0..3]	[85..5]
gi\|90579352, gi\|... - gi\|90579352\|ref\|ZP_01235162.1\| selenoprotein W-related protein [Vibrio angustum S14], gi\|90440185\|gb...	135.0	[0..1]	[85..1]
gi\|116250018, gi... - gi\|116250018\|ref\|YP_765856.1\| hypothetical protein RL0250 [Rhizobium leguminosarum bv. viciae 3841],...	134.0	[0..3]	[84..27]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVQVHVLY CGGUGYGSRY RSLENAIRMK FPNADIKFSF EATPQATGFF EVEVNGELVH  60
   61 SKKNGGGHVD NQEKVERIFA KIGEALAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2fa8A
Description:	Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits