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View Structure Prediction Details

Protein: gi|23397271, gi|...
Organism: Arabidopsis thaliana
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|23397271, gi|....

Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGEREVKNG VSEEEREVKR KRVMERSDSP PPPLGFNNPL LPLANTYDDD DEEEENEQKK  60
   61 SQARGNGVAK GEGNGNKVKG EAQEEVDDDE DDDVSKGKGK HSRHVEVRRD C

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYLDTVNRQV LDFDFERFCS VSLSNLNVYA CLVCGKYFQG RSQKSHAYTH SLEAGHHVYI  60
   61 NLLTEKVYCL PDSYEINDPS LDDIRHVLNP RFSRAQVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 3c5kA
Description: No description for 3c5kA was found.

Predicted Domain #3
Region A:
Residues: [210-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELDKNRQWSR ALDGSDYLPG MVGLNNIQKT EFVNVTIQSL MRVTPLRNFF LIPENYQHCK  60
   61 SPLVHRFGEL TRKIWHARNF KGQVSPHEFL QAVMKASKKR FRIGQQSDPV EFMSWLLNTL 120
  121 HMDLRTSKDA SSIIHKCFQG ELEVVKEFQG NENKEISRMS FLMLGLDLPP PPLFKDVMEK 180
  181 NIIPQVALFD LLKKFDGETV TEVVRPKLAR MRYRVIKSPR YLMFHMVRFK KNNFFKEKNP 240
  241 TLVNFPVKDM ELRDYIPSLP RAPEGENVCS KYNLIANIVH DGKPEDGYFR VFVQRKSQEL 300
  301 WYEMQDLHVA ETLPQMVELS EAYMQIYEQE EE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 2ibiA
Description: No description for 2ibiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle